Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35955

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35950 and QEN71_RS35955 are separated by 58 nucleotidesQEN71_RS35955 and QEN71_RS35960 are separated by 206 nucleotides QEN71_RS35950: QEN71_RS35950 - GGDEF domain-containing protein, at 1,446,197 to 1,447,360 _RS35950 QEN71_RS35955: QEN71_RS35955 - porin, at 1,447,419 to 1,448,717 _RS35955 QEN71_RS35960: QEN71_RS35960 - hypothetical protein, at 1,448,924 to 1,449,718 _RS35960 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -2 -1 0 1 2at 1446.485 kb on - strand, within QEN71_RS35950at 1446.485 kb on - strand, within QEN71_RS35950at 1446.651 kb on - strand, within QEN71_RS35950at 1446.797 kb on + strand, within QEN71_RS35950at 1446.799 kb on + strand, within QEN71_RS35950at 1446.799 kb on + strand, within QEN71_RS35950at 1446.869 kb on + strand, within QEN71_RS35950at 1446.870 kb on - strand, within QEN71_RS35950at 1446.873 kb on + strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.971 kb on + strand, within QEN71_RS35950at 1446.980 kb on - strand, within QEN71_RS35950at 1447.050 kb on - strand, within QEN71_RS35950at 1447.191 kb on + strand, within QEN71_RS35950at 1447.191 kb on + strand, within QEN71_RS35950at 1447.192 kb on - strand, within QEN71_RS35950at 1447.192 kb on - strand, within QEN71_RS35950at 1447.192 kb on - strand, within QEN71_RS35950at 1447.192 kb on - strand, within QEN71_RS35950at 1447.192 kb on - strand, within QEN71_RS35950at 1447.214 kb on + strand, within QEN71_RS35950at 1447.375 kb on + strandat 1447.376 kb on - strandat 1447.427 kb on + strandat 1447.427 kb on + strandat 1447.427 kb on + strandat 1447.427 kb on + strandat 1447.523 kb on + strandat 1447.523 kb on + strandat 1447.525 kb on + strandat 1447.525 kb on + strandat 1447.525 kb on + strandat 1447.526 kb on - strandat 1447.526 kb on - strandat 1447.526 kb on - strandat 1447.526 kb on - strandat 1447.576 kb on + strand, within QEN71_RS35955at 1447.628 kb on + strand, within QEN71_RS35955at 1447.629 kb on - strand, within QEN71_RS35955at 1447.692 kb on - strand, within QEN71_RS35955at 1447.789 kb on + strand, within QEN71_RS35955at 1447.790 kb on - strand, within QEN71_RS35955at 1447.790 kb on - strand, within QEN71_RS35955at 1447.847 kb on + strand, within QEN71_RS35955at 1447.847 kb on + strand, within QEN71_RS35955at 1447.848 kb on - strand, within QEN71_RS35955at 1447.849 kb on + strand, within QEN71_RS35955at 1447.849 kb on + strand, within QEN71_RS35955at 1447.850 kb on - strand, within QEN71_RS35955at 1447.850 kb on - strand, within QEN71_RS35955at 1447.850 kb on - strand, within QEN71_RS35955at 1447.928 kb on + strand, within QEN71_RS35955at 1447.928 kb on + strand, within QEN71_RS35955at 1447.951 kb on + strand, within QEN71_RS35955at 1447.951 kb on + strand, within QEN71_RS35955at 1447.951 kb on + strand, within QEN71_RS35955at 1447.951 kb on + strand, within QEN71_RS35955at 1447.951 kb on + strand, within QEN71_RS35955at 1447.951 kb on + strand, within QEN71_RS35955at 1447.952 kb on - strand, within QEN71_RS35955at 1447.952 kb on - strand, within QEN71_RS35955at 1448.014 kb on + strand, within QEN71_RS35955at 1448.014 kb on + strand, within QEN71_RS35955at 1448.014 kb on + strand, within QEN71_RS35955at 1448.053 kb on + strand, within QEN71_RS35955at 1448.054 kb on - strand, within QEN71_RS35955at 1448.054 kb on - strand, within QEN71_RS35955at 1448.113 kb on + strand, within QEN71_RS35955at 1448.114 kb on - strand, within QEN71_RS35955at 1448.114 kb on - strand, within QEN71_RS35955at 1448.114 kb on - strand, within QEN71_RS35955at 1448.114 kb on - strand, within QEN71_RS35955at 1448.143 kb on + strand, within QEN71_RS35955at 1448.143 kb on + strand, within QEN71_RS35955at 1448.143 kb on + strand, within QEN71_RS35955at 1448.144 kb on - strand, within QEN71_RS35955at 1448.144 kb on - strand, within QEN71_RS35955at 1448.144 kb on - strand, within QEN71_RS35955at 1448.144 kb on - strand, within QEN71_RS35955at 1448.144 kb on - strand, within QEN71_RS35955at 1448.312 kb on + strand, within QEN71_RS35955at 1448.420 kb on - strand, within QEN71_RS35955at 1448.446 kb on + strand, within QEN71_RS35955at 1448.446 kb on + strand, within QEN71_RS35955at 1448.446 kb on + strand, within QEN71_RS35955at 1448.447 kb on - strand, within QEN71_RS35955at 1448.575 kb on + strand, within QEN71_RS35955at 1448.576 kb on - strand, within QEN71_RS35955at 1448.626 kb on + strandat 1448.626 kb on + strandat 1448.652 kb on + strandat 1448.653 kb on - strandat 1448.669 kb on + strandat 1448.728 kb on - strandat 1448.759 kb on + strandat 1448.759 kb on + strandat 1448.759 kb on + strandat 1448.760 kb on - strandat 1448.760 kb on - strandat 1448.760 kb on - strandat 1448.816 kb on - strandat 1448.822 kb on - strandat 1448.833 kb on - strandat 1448.833 kb on - strandat 1448.848 kb on + strandat 1448.848 kb on + strandat 1448.848 kb on + strandat 1448.848 kb on + strandat 1448.848 kb on + strandat 1448.849 kb on - strandat 1448.849 kb on - strandat 1448.849 kb on - strandat 1448.911 kb on - strandat 1448.920 kb on - strandat 1448.966 kb on + strandat 1448.967 kb on - strandat 1449.028 kb on + strand, within QEN71_RS35960at 1449.034 kb on + strand, within QEN71_RS35960at 1449.035 kb on - strand, within QEN71_RS35960at 1449.035 kb on - strand, within QEN71_RS35960at 1449.042 kb on + strand, within QEN71_RS35960at 1449.042 kb on + strand, within QEN71_RS35960at 1449.168 kb on + strand, within QEN71_RS35960at 1449.169 kb on - strand, within QEN71_RS35960at 1449.365 kb on + strand, within QEN71_RS35960at 1449.365 kb on + strand, within QEN71_RS35960at 1449.366 kb on - strand, within QEN71_RS35960at 1449.366 kb on - strand, within QEN71_RS35960at 1449.366 kb on - strand, within QEN71_RS35960at 1449.366 kb on - strand, within QEN71_RS35960at 1449.366 kb on - strand, within QEN71_RS35960at 1449.366 kb on - strand, within QEN71_RS35960at 1449.368 kb on + strand, within QEN71_RS35960at 1449.368 kb on + strand, within QEN71_RS35960at 1449.368 kb on + strand, within QEN71_RS35960at 1449.368 kb on + strand, within QEN71_RS35960at 1449.368 kb on + strand, within QEN71_RS35960at 1449.368 kb on + strand, within QEN71_RS35960at 1449.368 kb on + strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.369 kb on - strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.374 kb on + strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.375 kb on - strand, within QEN71_RS35960at 1449.438 kb on - strand, within QEN71_RS35960at 1449.438 kb on - strand, within QEN71_RS35960at 1449.438 kb on - strand, within QEN71_RS35960at 1449.438 kb on - strand, within QEN71_RS35960at 1449.462 kb on + strand, within QEN71_RS35960at 1449.462 kb on + strand, within QEN71_RS35960at 1449.462 kb on + strand, within QEN71_RS35960at 1449.463 kb on - strand, within QEN71_RS35960at 1449.716 kb on + strandat 1449.716 kb on + strandat 1449.717 kb on - strandat 1449.717 kb on - strandat 1449.717 kb on - strandat 1449.717 kb on - strandat 1449.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,446,485 - QEN71_RS35950 0.25 -0.4
1,446,485 - QEN71_RS35950 0.25 -0.6
1,446,651 - QEN71_RS35950 0.39 -0.0
1,446,797 + QEN71_RS35950 0.52 -0.7
1,446,799 + QEN71_RS35950 0.52 +0.1
1,446,799 + QEN71_RS35950 0.52 -0.1
1,446,869 + QEN71_RS35950 0.58 -0.1
1,446,870 - QEN71_RS35950 0.58 -1.1
1,446,873 + QEN71_RS35950 0.58 +0.4
1,446,874 - QEN71_RS35950 0.58 +0.6
1,446,874 - QEN71_RS35950 0.58 -0.2
1,446,874 - QEN71_RS35950 0.58 -0.6
1,446,874 - QEN71_RS35950 0.58 -1.2
1,446,874 - QEN71_RS35950 0.58 -1.0
1,446,971 + QEN71_RS35950 0.66 +0.2
1,446,980 - QEN71_RS35950 0.67 -0.3
1,447,050 - QEN71_RS35950 0.73 +0.1
1,447,191 + QEN71_RS35950 0.85 +0.6
1,447,191 + QEN71_RS35950 0.85 -2.3
1,447,192 - QEN71_RS35950 0.85 -0.3
1,447,192 - QEN71_RS35950 0.85 -1.0
1,447,192 - QEN71_RS35950 0.85 +0.5
1,447,192 - QEN71_RS35950 0.85 -0.0
1,447,192 - QEN71_RS35950 0.85 +0.4
1,447,214 + QEN71_RS35950 0.87 -1.4
1,447,375 + +1.0
1,447,376 - +1.3
1,447,427 + -0.8
1,447,427 + -0.4
1,447,427 + -0.2
1,447,427 + +0.3
1,447,523 + +0.4
1,447,523 + -0.6
1,447,525 + -0.5
1,447,525 + +0.2
1,447,525 + -0.6
1,447,526 - -0.9
1,447,526 - -0.3
1,447,526 - +0.7
1,447,526 - -0.3
1,447,576 + QEN71_RS35955 0.12 -0.6
1,447,628 + QEN71_RS35955 0.16 -0.0
1,447,629 - QEN71_RS35955 0.16 +0.3
1,447,692 - QEN71_RS35955 0.21 -1.3
1,447,789 + QEN71_RS35955 0.28 +0.2
1,447,790 - QEN71_RS35955 0.29 +1.6
1,447,790 - QEN71_RS35955 0.29 +0.2
1,447,847 + QEN71_RS35955 0.33 -0.1
1,447,847 + QEN71_RS35955 0.33 -0.0
1,447,848 - QEN71_RS35955 0.33 -0.9
1,447,849 + QEN71_RS35955 0.33 -0.8
1,447,849 + QEN71_RS35955 0.33 -1.0
1,447,850 - QEN71_RS35955 0.33 -0.7
1,447,850 - QEN71_RS35955 0.33 -0.2
1,447,850 - QEN71_RS35955 0.33 -0.0
1,447,928 + QEN71_RS35955 0.39 +0.2
1,447,928 + QEN71_RS35955 0.39 -0.8
1,447,951 + QEN71_RS35955 0.41 -0.5
1,447,951 + QEN71_RS35955 0.41 -1.1
1,447,951 + QEN71_RS35955 0.41 -0.7
1,447,951 + QEN71_RS35955 0.41 -0.1
1,447,951 + QEN71_RS35955 0.41 -0.3
1,447,951 + QEN71_RS35955 0.41 +0.7
1,447,952 - QEN71_RS35955 0.41 -1.2
1,447,952 - QEN71_RS35955 0.41 -0.1
1,448,014 + QEN71_RS35955 0.46 -0.2
1,448,014 + QEN71_RS35955 0.46 +0.0
1,448,014 + QEN71_RS35955 0.46 -2.2
1,448,053 + QEN71_RS35955 0.49 -0.0
1,448,054 - QEN71_RS35955 0.49 +0.4
1,448,054 - QEN71_RS35955 0.49 +0.3
1,448,113 + QEN71_RS35955 0.53 +0.2
1,448,114 - QEN71_RS35955 0.54 -0.0
1,448,114 - QEN71_RS35955 0.54 +0.3
1,448,114 - QEN71_RS35955 0.54 +0.0
1,448,114 - QEN71_RS35955 0.54 -0.1
1,448,143 + QEN71_RS35955 0.56 -1.1
1,448,143 + QEN71_RS35955 0.56 -0.5
1,448,143 + QEN71_RS35955 0.56 -0.6
1,448,144 - QEN71_RS35955 0.56 -1.3
1,448,144 - QEN71_RS35955 0.56 -0.7
1,448,144 - QEN71_RS35955 0.56 -0.1
1,448,144 - QEN71_RS35955 0.56 +1.2
1,448,144 - QEN71_RS35955 0.56 -0.3
1,448,312 + QEN71_RS35955 0.69 -1.0
1,448,420 - QEN71_RS35955 0.77 -0.3
1,448,446 + QEN71_RS35955 0.79 -0.6
1,448,446 + QEN71_RS35955 0.79 +1.0
1,448,446 + QEN71_RS35955 0.79 -1.1
1,448,447 - QEN71_RS35955 0.79 -0.0
1,448,575 + QEN71_RS35955 0.89 -0.2
1,448,576 - QEN71_RS35955 0.89 -1.9
1,448,626 + -0.3
1,448,626 + +0.3
1,448,652 + -0.2
1,448,653 - -1.6
1,448,669 + +0.7
1,448,728 - +0.2
1,448,759 + -0.4
1,448,759 + +0.3
1,448,759 + +0.2
1,448,760 - +1.3
1,448,760 - +1.2
1,448,760 - +0.1
1,448,816 - +0.1
1,448,822 - -1.2
1,448,833 - +0.4
1,448,833 - +0.7
1,448,848 + -1.2
1,448,848 + -1.3
1,448,848 + -0.3
1,448,848 + +0.2
1,448,848 + -0.0
1,448,849 - +0.2
1,448,849 - -1.0
1,448,849 - -0.0
1,448,911 - -0.3
1,448,920 - +1.1
1,448,966 + -0.6
1,448,967 - -0.7
1,449,028 + QEN71_RS35960 0.13 +1.0
1,449,034 + QEN71_RS35960 0.14 -1.2
1,449,035 - QEN71_RS35960 0.14 +1.4
1,449,035 - QEN71_RS35960 0.14 +1.3
1,449,042 + QEN71_RS35960 0.15 -0.2
1,449,042 + QEN71_RS35960 0.15 +1.2
1,449,168 + QEN71_RS35960 0.31 -1.5
1,449,169 - QEN71_RS35960 0.31 -0.6
1,449,365 + QEN71_RS35960 0.55 -0.2
1,449,365 + QEN71_RS35960 0.55 -0.7
1,449,366 - QEN71_RS35960 0.56 -0.3
1,449,366 - QEN71_RS35960 0.56 -0.4
1,449,366 - QEN71_RS35960 0.56 +0.8
1,449,366 - QEN71_RS35960 0.56 -0.4
1,449,366 - QEN71_RS35960 0.56 +1.1
1,449,366 - QEN71_RS35960 0.56 -2.0
1,449,368 + QEN71_RS35960 0.56 +0.8
1,449,368 + QEN71_RS35960 0.56 -0.3
1,449,368 + QEN71_RS35960 0.56 +2.0
1,449,368 + QEN71_RS35960 0.56 -0.0
1,449,368 + QEN71_RS35960 0.56 +0.4
1,449,368 + QEN71_RS35960 0.56 +0.1
1,449,368 + QEN71_RS35960 0.56 -0.9
1,449,369 - QEN71_RS35960 0.56 +0.8
1,449,369 - QEN71_RS35960 0.56 +0.4
1,449,369 - QEN71_RS35960 0.56 -1.3
1,449,369 - QEN71_RS35960 0.56 -0.0
1,449,369 - QEN71_RS35960 0.56 +1.7
1,449,369 - QEN71_RS35960 0.56 +0.5
1,449,369 - QEN71_RS35960 0.56 -1.0
1,449,369 - QEN71_RS35960 0.56 +1.8
1,449,369 - QEN71_RS35960 0.56 -0.8
1,449,369 - QEN71_RS35960 0.56 -0.4
1,449,369 - QEN71_RS35960 0.56 +1.2
1,449,374 + QEN71_RS35960 0.57 +0.5
1,449,374 + QEN71_RS35960 0.57 -0.8
1,449,374 + QEN71_RS35960 0.57 -0.7
1,449,374 + QEN71_RS35960 0.57 -1.1
1,449,374 + QEN71_RS35960 0.57 -0.3
1,449,374 + QEN71_RS35960 0.57 +0.6
1,449,374 + QEN71_RS35960 0.57 -0.5
1,449,374 + QEN71_RS35960 0.57 -0.0
1,449,374 + QEN71_RS35960 0.57 +1.1
1,449,374 + QEN71_RS35960 0.57 +0.5
1,449,374 + QEN71_RS35960 0.57 +0.0
1,449,374 + QEN71_RS35960 0.57 -0.1
1,449,375 - QEN71_RS35960 0.57 +0.6
1,449,375 - QEN71_RS35960 0.57 +0.3
1,449,375 - QEN71_RS35960 0.57 +0.2
1,449,375 - QEN71_RS35960 0.57 -0.3
1,449,375 - QEN71_RS35960 0.57 -0.5
1,449,375 - QEN71_RS35960 0.57 -0.0
1,449,375 - QEN71_RS35960 0.57 -0.4
1,449,375 - QEN71_RS35960 0.57 +1.1
1,449,375 - QEN71_RS35960 0.57 +0.1
1,449,375 - QEN71_RS35960 0.57 -1.6
1,449,375 - QEN71_RS35960 0.57 +0.1
1,449,375 - QEN71_RS35960 0.57 -0.0
1,449,375 - QEN71_RS35960 0.57 +0.3
1,449,375 - QEN71_RS35960 0.57 -0.9
1,449,438 - QEN71_RS35960 0.65 +0.4
1,449,438 - QEN71_RS35960 0.65 -0.0
1,449,438 - QEN71_RS35960 0.65 -1.3
1,449,438 - QEN71_RS35960 0.65 +0.0
1,449,462 + QEN71_RS35960 0.68 -0.3
1,449,462 + QEN71_RS35960 0.68 -0.3
1,449,462 + QEN71_RS35960 0.68 +0.2
1,449,463 - QEN71_RS35960 0.68 -0.0
1,449,716 + +0.5
1,449,716 + +0.1
1,449,717 - -0.6
1,449,717 - +0.1
1,449,717 - +0.1
1,449,717 - -0.7
1,449,717 - -0.7

Or see this region's nucleotide sequence