Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33480 and QEN71_RS33485 are separated by 304 nucleotides QEN71_RS33485 and QEN71_RS33490 are separated by 11 nucleotides QEN71_RS33490 and QEN71_RS33495 are separated by 132 nucleotides
QEN71_RS33480: QEN71_RS33480 - high-potential iron-sulfur protein, at 827,460 to 827,771
_RS33480
QEN71_RS33485: QEN71_RS33485 - GNAT family N-acetyltransferase, at 828,076 to 828,531
_RS33485
QEN71_RS33490: QEN71_RS33490 - LysR substrate-binding domain-containing protein, at 828,543 to 829,499
_RS33490
QEN71_RS33495: QEN71_RS33495 - mandelate racemase/muconate lactonizing enzyme family protein, at 829,632 to 830,798
_RS33495
Position (kb) 828
829
830 Strain fitness (log2 ratio) -2
-1
0
1 at 827.560 kb on + strand, within QEN71_RS33480 at 827.642 kb on - strand, within QEN71_RS33480 at 827.743 kb on - strand at 827.796 kb on + strand at 827.797 kb on - strand at 827.962 kb on - strand at 827.962 kb on - strand at 827.972 kb on + strand at 828.184 kb on + strand, within QEN71_RS33485 at 828.185 kb on - strand, within QEN71_RS33485 at 828.185 kb on - strand, within QEN71_RS33485 at 828.422 kb on + strand, within QEN71_RS33485 at 828.683 kb on - strand, within QEN71_RS33490 at 828.714 kb on - strand, within QEN71_RS33490 at 828.752 kb on - strand, within QEN71_RS33490 at 828.752 kb on - strand, within QEN71_RS33490 at 828.883 kb on + strand, within QEN71_RS33490 at 828.983 kb on - strand, within QEN71_RS33490 at 829.161 kb on + strand, within QEN71_RS33490 at 829.300 kb on + strand, within QEN71_RS33490 at 829.493 kb on + strand at 829.605 kb on - strand at 829.605 kb on - strand at 830.079 kb on + strand, within QEN71_RS33495 at 830.097 kb on + strand, within QEN71_RS33495 at 830.097 kb on + strand, within QEN71_RS33495 at 830.098 kb on - strand, within QEN71_RS33495 at 830.098 kb on - strand, within QEN71_RS33495 at 830.145 kb on + strand, within QEN71_RS33495 at 830.145 kb on + strand, within QEN71_RS33495 at 830.145 kb on + strand, within QEN71_RS33495 at 830.146 kb on - strand, within QEN71_RS33495 at 830.148 kb on - strand, within QEN71_RS33495 at 830.148 kb on - strand, within QEN71_RS33495 at 830.162 kb on + strand, within QEN71_RS33495 at 830.305 kb on - strand, within QEN71_RS33495 at 830.326 kb on - strand, within QEN71_RS33495 at 830.394 kb on + strand, within QEN71_RS33495 at 830.397 kb on + strand, within QEN71_RS33495 at 830.397 kb on + strand, within QEN71_RS33495
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 827,560 + QEN71_RS33480 0.32 -0.5 827,642 - QEN71_RS33480 0.58 -0.0 827,743 - -1.4 827,796 + +0.4 827,797 - -0.5 827,962 - -1.1 827,962 - -0.3 827,972 + +0.1 828,184 + QEN71_RS33485 0.24 +0.7 828,185 - QEN71_RS33485 0.24 -0.5 828,185 - QEN71_RS33485 0.24 +0.8 828,422 + QEN71_RS33485 0.76 -0.9 828,683 - QEN71_RS33490 0.15 +0.4 828,714 - QEN71_RS33490 0.18 +0.6 828,752 - QEN71_RS33490 0.22 +0.3 828,752 - QEN71_RS33490 0.22 -0.2 828,883 + QEN71_RS33490 0.36 +0.6 828,983 - QEN71_RS33490 0.46 +1.7 829,161 + QEN71_RS33490 0.65 -0.6 829,300 + QEN71_RS33490 0.79 +0.2 829,493 + -2.5 829,605 - -0.5 829,605 - -0.6 830,079 + QEN71_RS33495 0.38 -0.9 830,097 + QEN71_RS33495 0.40 -1.0 830,097 + QEN71_RS33495 0.40 +0.6 830,098 - QEN71_RS33495 0.40 +0.1 830,098 - QEN71_RS33495 0.40 -0.3 830,145 + QEN71_RS33495 0.44 +0.5 830,145 + QEN71_RS33495 0.44 -1.3 830,145 + QEN71_RS33495 0.44 -0.7 830,146 - QEN71_RS33495 0.44 -1.6 830,148 - QEN71_RS33495 0.44 +1.1 830,148 - QEN71_RS33495 0.44 -1.4 830,162 + QEN71_RS33495 0.45 -0.9 830,305 - QEN71_RS33495 0.58 +0.1 830,326 - QEN71_RS33495 0.59 -0.5 830,394 + QEN71_RS33495 0.65 -1.0 830,397 + QEN71_RS33495 0.66 +0.4 830,397 + QEN71_RS33495 0.66 -0.3
Or see this region's nucleotide sequence