Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32575 and QEN71_RS32580 are separated by 58 nucleotides QEN71_RS32580 and QEN71_RS32585 are separated by 1 nucleotides QEN71_RS32585 and QEN71_RS32590 are separated by 26 nucleotides
QEN71_RS32575: QEN71_RS32575 - ABC transporter substrate-binding protein, at 645,252 to 646,271
_RS32575
QEN71_RS32580: QEN71_RS32580 - ABC transporter permease, at 646,330 to 647,214
_RS32580
QEN71_RS32585: QEN71_RS32585 - ABC transporter permease, at 647,216 to 648,010
_RS32585
QEN71_RS32590: QEN71_RS32590 - ABC transporter ATP-binding protein, at 648,037 to 649,134
_RS32590
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1 at 646.269 kb on + strand at 646.270 kb on - strand at 646.270 kb on - strand at 646.335 kb on + strand at 646.336 kb on - strand at 646.336 kb on - strand at 646.472 kb on + strand, within QEN71_RS32580 at 646.473 kb on - strand, within QEN71_RS32580 at 646.511 kb on - strand, within QEN71_RS32580 at 646.537 kb on + strand, within QEN71_RS32580 at 646.538 kb on - strand, within QEN71_RS32580 at 646.831 kb on + strand, within QEN71_RS32580 at 646.831 kb on + strand, within QEN71_RS32580 at 646.831 kb on + strand, within QEN71_RS32580 at 646.831 kb on + strand, within QEN71_RS32580 at 647.158 kb on + strand at 647.158 kb on + strand at 647.158 kb on + strand at 647.588 kb on + strand, within QEN71_RS32585 at 647.809 kb on + strand, within QEN71_RS32585 at 647.971 kb on - strand at 648.178 kb on + strand, within QEN71_RS32590 at 648.574 kb on - strand, within QEN71_RS32590 at 648.780 kb on + strand, within QEN71_RS32590 at 648.792 kb on + strand, within QEN71_RS32590 at 648.919 kb on - strand, within QEN71_RS32590 at 648.973 kb on + strand, within QEN71_RS32590 at 648.974 kb on - strand, within QEN71_RS32590 at 648.974 kb on - strand, within QEN71_RS32590
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 646,269 + -0.3 646,270 - -0.4 646,270 - -0.3 646,335 + +0.1 646,336 - -2.0 646,336 - +0.4 646,472 + QEN71_RS32580 0.16 +1.0 646,473 - QEN71_RS32580 0.16 -0.8 646,511 - QEN71_RS32580 0.20 -0.5 646,537 + QEN71_RS32580 0.23 +0.6 646,538 - QEN71_RS32580 0.24 -0.1 646,831 + QEN71_RS32580 0.57 -2.1 646,831 + QEN71_RS32580 0.57 -0.8 646,831 + QEN71_RS32580 0.57 -1.6 646,831 + QEN71_RS32580 0.57 -0.5 647,158 + -0.5 647,158 + +0.8 647,158 + +1.6 647,588 + QEN71_RS32585 0.47 +1.3 647,809 + QEN71_RS32585 0.75 -0.3 647,971 - +0.6 648,178 + QEN71_RS32590 0.13 -0.2 648,574 - QEN71_RS32590 0.49 -1.0 648,780 + QEN71_RS32590 0.68 +0.5 648,792 + QEN71_RS32590 0.69 +0.2 648,919 - QEN71_RS32590 0.80 -0.1 648,973 + QEN71_RS32590 0.85 -2.0 648,974 - QEN71_RS32590 0.85 +0.1 648,974 - QEN71_RS32590 0.85 +1.6
Or see this region's nucleotide sequence