Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32280 and QEN71_RS32285 are separated by 578 nucleotides QEN71_RS32285 and QEN71_RS32290 are separated by 108 nucleotides
QEN71_RS32280: QEN71_RS32280 - lyase, at 582,916 to 583,863
_RS32280
QEN71_RS32285: QEN71_RS32285 - branched-chain amino acid ABC transporter substrate-binding protein, at 584,442 to 585,578
_RS32285
QEN71_RS32290: QEN71_RS32290 - metallophosphoesterase family protein, at 585,687 to 587,405
_RS32290
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.469 kb on + strand, within QEN71_RS32280 at 583.469 kb on + strand, within QEN71_RS32280 at 583.469 kb on + strand, within QEN71_RS32280 at 583.470 kb on - strand, within QEN71_RS32280 at 583.525 kb on - strand, within QEN71_RS32280 at 583.654 kb on + strand, within QEN71_RS32280 at 583.751 kb on + strand, within QEN71_RS32280 at 583.852 kb on + strand at 583.859 kb on - strand at 583.999 kb on + strand at 584.000 kb on - strand at 584.000 kb on - strand at 584.000 kb on - strand at 584.000 kb on - strand at 584.164 kb on - strand at 584.164 kb on - strand at 584.175 kb on + strand at 584.175 kb on + strand at 584.176 kb on - strand at 584.176 kb on - strand at 584.329 kb on + strand at 584.749 kb on - strand, within QEN71_RS32285 at 584.749 kb on - strand, within QEN71_RS32285 at 584.749 kb on - strand, within QEN71_RS32285 at 584.749 kb on - strand, within QEN71_RS32285 at 584.882 kb on + strand, within QEN71_RS32285 at 584.910 kb on + strand, within QEN71_RS32285 at 584.910 kb on + strand, within QEN71_RS32285 at 584.910 kb on + strand, within QEN71_RS32285 at 584.910 kb on + strand, within QEN71_RS32285 at 584.910 kb on + strand, within QEN71_RS32285 at 584.911 kb on - strand, within QEN71_RS32285 at 584.911 kb on - strand, within QEN71_RS32285 at 584.911 kb on - strand, within QEN71_RS32285 at 584.911 kb on - strand, within QEN71_RS32285 at 584.911 kb on - strand, within QEN71_RS32285 at 585.039 kb on + strand, within QEN71_RS32285 at 585.039 kb on + strand, within QEN71_RS32285 at 585.039 kb on + strand, within QEN71_RS32285 at 585.040 kb on - strand, within QEN71_RS32285 at 585.041 kb on + strand, within QEN71_RS32285 at 585.041 kb on + strand, within QEN71_RS32285 at 585.042 kb on - strand, within QEN71_RS32285 at 585.042 kb on - strand, within QEN71_RS32285 at 585.042 kb on - strand, within QEN71_RS32285 at 585.042 kb on - strand, within QEN71_RS32285 at 585.085 kb on + strand, within QEN71_RS32285 at 585.085 kb on + strand, within QEN71_RS32285 at 585.086 kb on - strand, within QEN71_RS32285 at 585.086 kb on - strand, within QEN71_RS32285 at 585.086 kb on - strand, within QEN71_RS32285 at 585.264 kb on + strand, within QEN71_RS32285 at 585.264 kb on + strand, within QEN71_RS32285 at 585.265 kb on - strand, within QEN71_RS32285 at 585.348 kb on + strand, within QEN71_RS32285 at 585.349 kb on - strand, within QEN71_RS32285 at 585.454 kb on - strand, within QEN71_RS32285 at 585.473 kb on + strand at 585.474 kb on - strand at 585.522 kb on + strand at 585.685 kb on + strand at 585.686 kb on - strand at 585.734 kb on - strand at 585.734 kb on - strand at 585.772 kb on + strand at 585.773 kb on - strand at 585.776 kb on - strand at 585.776 kb on - strand at 585.842 kb on - strand at 585.997 kb on + strand, within QEN71_RS32290 at 585.997 kb on + strand, within QEN71_RS32290 at 585.997 kb on + strand, within QEN71_RS32290 at 585.997 kb on + strand, within QEN71_RS32290 at 585.998 kb on - strand, within QEN71_RS32290 at 585.998 kb on - strand, within QEN71_RS32290 at 586.070 kb on + strand, within QEN71_RS32290 at 586.070 kb on + strand, within QEN71_RS32290 at 586.071 kb on - strand, within QEN71_RS32290 at 586.071 kb on - strand, within QEN71_RS32290 at 586.071 kb on - strand, within QEN71_RS32290 at 586.192 kb on + strand, within QEN71_RS32290 at 586.193 kb on - strand, within QEN71_RS32290 at 586.340 kb on + strand, within QEN71_RS32290 at 586.417 kb on + strand, within QEN71_RS32290 at 586.418 kb on - strand, within QEN71_RS32290 at 586.418 kb on - strand, within QEN71_RS32290 at 586.418 kb on - strand, within QEN71_RS32290 at 586.511 kb on - strand, within QEN71_RS32290 at 586.567 kb on + strand, within QEN71_RS32290
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 583,469 + QEN71_RS32280 0.58 +0.8 583,469 + QEN71_RS32280 0.58 +0.6 583,469 + QEN71_RS32280 0.58 -0.5 583,470 - QEN71_RS32280 0.58 +0.4 583,525 - QEN71_RS32280 0.64 -0.9 583,654 + QEN71_RS32280 0.78 +0.1 583,751 + QEN71_RS32280 0.88 +1.3 583,852 + +1.0 583,859 - -1.0 583,999 + +0.2 584,000 - +1.0 584,000 - +0.1 584,000 - -0.9 584,000 - +0.1 584,164 - +1.4 584,164 - -0.5 584,175 + -0.3 584,175 + -0.7 584,176 - +0.2 584,176 - +0.2 584,329 + +0.1 584,749 - QEN71_RS32285 0.27 -2.2 584,749 - QEN71_RS32285 0.27 +0.1 584,749 - QEN71_RS32285 0.27 +0.5 584,749 - QEN71_RS32285 0.27 +0.0 584,882 + QEN71_RS32285 0.39 +0.2 584,910 + QEN71_RS32285 0.41 +0.4 584,910 + QEN71_RS32285 0.41 +0.1 584,910 + QEN71_RS32285 0.41 +0.0 584,910 + QEN71_RS32285 0.41 -0.8 584,910 + QEN71_RS32285 0.41 +0.0 584,911 - QEN71_RS32285 0.41 +0.0 584,911 - QEN71_RS32285 0.41 -0.6 584,911 - QEN71_RS32285 0.41 +0.0 584,911 - QEN71_RS32285 0.41 -0.0 584,911 - QEN71_RS32285 0.41 +0.8 585,039 + QEN71_RS32285 0.53 +1.0 585,039 + QEN71_RS32285 0.53 -0.4 585,039 + QEN71_RS32285 0.53 -0.9 585,040 - QEN71_RS32285 0.53 +1.5 585,041 + QEN71_RS32285 0.53 +0.4 585,041 + QEN71_RS32285 0.53 -1.5 585,042 - QEN71_RS32285 0.53 +0.8 585,042 - QEN71_RS32285 0.53 +0.9 585,042 - QEN71_RS32285 0.53 -0.5 585,042 - QEN71_RS32285 0.53 -0.2 585,085 + QEN71_RS32285 0.57 -0.1 585,085 + QEN71_RS32285 0.57 -0.8 585,086 - QEN71_RS32285 0.57 -0.8 585,086 - QEN71_RS32285 0.57 -0.4 585,086 - QEN71_RS32285 0.57 +1.9 585,264 + QEN71_RS32285 0.72 -0.2 585,264 + QEN71_RS32285 0.72 -2.0 585,265 - QEN71_RS32285 0.72 -1.1 585,348 + QEN71_RS32285 0.80 +1.4 585,349 - QEN71_RS32285 0.80 -0.8 585,454 - QEN71_RS32285 0.89 +0.0 585,473 + -1.1 585,474 - +1.0 585,522 + -0.8 585,685 + -0.2 585,686 - +1.8 585,734 - -2.0 585,734 - +0.9 585,772 + -0.9 585,773 - -0.7 585,776 - -0.1 585,776 - +0.7 585,842 - +0.0 585,997 + QEN71_RS32290 0.18 +0.0 585,997 + QEN71_RS32290 0.18 +0.1 585,997 + QEN71_RS32290 0.18 -1.1 585,997 + QEN71_RS32290 0.18 -0.9 585,998 - QEN71_RS32290 0.18 -0.1 585,998 - QEN71_RS32290 0.18 -2.3 586,070 + QEN71_RS32290 0.22 -1.3 586,070 + QEN71_RS32290 0.22 +0.3 586,071 - QEN71_RS32290 0.22 -0.1 586,071 - QEN71_RS32290 0.22 +0.1 586,071 - QEN71_RS32290 0.22 +0.4 586,192 + QEN71_RS32290 0.29 +0.1 586,193 - QEN71_RS32290 0.29 -0.9 586,340 + QEN71_RS32290 0.38 +0.5 586,417 + QEN71_RS32290 0.42 -1.0 586,418 - QEN71_RS32290 0.43 +0.7 586,418 - QEN71_RS32290 0.43 +0.5 586,418 - QEN71_RS32290 0.43 -1.0 586,511 - QEN71_RS32290 0.48 +0.2 586,567 + QEN71_RS32290 0.51 +0.3
Or see this region's nucleotide sequence