Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31365 and QEN71_RS31370 are separated by 381 nucleotides QEN71_RS31370 and QEN71_RS31375 are separated by 135 nucleotides QEN71_RS31375 and QEN71_RS31380 are separated by 433 nucleotides
QEN71_RS31365: QEN71_RS31365 - MFS transporter, at 384,927 to 386,192
_RS31365
QEN71_RS31370: QEN71_RS31370 - aldehyde dehydrogenase (NADP(+)), at 386,574 to 388,175
_RS31370
QEN71_RS31375: QEN71_RS31375 - DUF4148 domain-containing protein, at 388,311 to 388,595
_RS31375
QEN71_RS31380: QEN71_RS31380 - branched-chain amino acid ABC transporter substrate-binding protein, at 389,029 to 390,201
_RS31380
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 386.173 kb on - strand at 386.254 kb on + strand at 386.254 kb on + strand at 386.255 kb on - strand at 386.255 kb on - strand at 386.261 kb on - strand at 386.261 kb on - strand at 386.517 kb on - strand at 386.748 kb on + strand, within QEN71_RS31370 at 387.364 kb on - strand, within QEN71_RS31370 at 387.500 kb on - strand, within QEN71_RS31370 at 387.607 kb on - strand, within QEN71_RS31370 at 387.860 kb on - strand, within QEN71_RS31370 at 388.063 kb on - strand at 388.072 kb on + strand at 388.072 kb on + strand at 388.073 kb on - strand at 388.677 kb on + strand at 388.677 kb on + strand at 388.759 kb on + strand at 388.760 kb on - strand at 388.760 kb on - strand at 388.760 kb on - strand at 389.023 kb on + strand at 389.167 kb on + strand, within QEN71_RS31380 at 389.168 kb on - strand, within QEN71_RS31380
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 386,173 - +1.1 386,254 + -2.0 386,254 + +1.7 386,255 - +1.0 386,255 - -0.3 386,261 - +0.6 386,261 - -2.1 386,517 - +0.3 386,748 + QEN71_RS31370 0.11 -0.8 387,364 - QEN71_RS31370 0.49 -0.4 387,500 - QEN71_RS31370 0.58 +1.3 387,607 - QEN71_RS31370 0.64 +1.9 387,860 - QEN71_RS31370 0.80 +0.3 388,063 - -0.7 388,072 + +0.1 388,072 + -0.2 388,073 - -1.4 388,677 + +0.1 388,677 + -1.7 388,759 + +2.4 388,760 - +0.7 388,760 - -0.2 388,760 - +0.7 389,023 + -0.8 389,167 + QEN71_RS31380 0.12 -0.2 389,168 - QEN71_RS31380 0.12 -0.8
Or see this region's nucleotide sequence