Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30705 and QEN71_RS30710 are separated by 44 nucleotides QEN71_RS30710 and QEN71_RS30715 overlap by 1 nucleotides QEN71_RS30715 and QEN71_RS30720 are separated by 15 nucleotides
QEN71_RS30705: QEN71_RS30705 - LysR family transcriptional regulator, at 230,569 to 231,426
_RS30705
QEN71_RS30710: QEN71_RS30710 - AraC family transcriptional regulator, at 231,471 to 232,007
_RS30710
QEN71_RS30715: QEN71_RS30715 - VOC family protein, at 232,007 to 232,414
_RS30715
QEN71_RS30720: QEN71_RS30720 - hybrid sensor histidine kinase/response regulator, at 232,430 to 234,604
_RS30720
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 230.504 kb on + strand at 230.522 kb on + strand at 230.535 kb on - strand at 230.538 kb on - strand at 230.562 kb on + strand at 230.562 kb on + strand at 230.562 kb on + strand at 230.612 kb on + strand at 230.876 kb on - strand, within QEN71_RS30705 at 230.876 kb on - strand, within QEN71_RS30705 at 230.876 kb on - strand, within QEN71_RS30705 at 231.200 kb on - strand, within QEN71_RS30705 at 231.436 kb on - strand at 231.436 kb on - strand at 231.440 kb on + strand at 231.440 kb on + strand at 231.440 kb on + strand at 231.441 kb on - strand at 231.696 kb on + strand, within QEN71_RS30710 at 231.696 kb on + strand, within QEN71_RS30710 at 231.697 kb on - strand, within QEN71_RS30710 at 231.697 kb on - strand, within QEN71_RS30710 at 231.697 kb on - strand, within QEN71_RS30710 at 231.971 kb on + strand at 231.971 kb on + strand at 231.972 kb on - strand at 231.972 kb on - strand at 232.001 kb on - strand at 232.019 kb on - strand at 232.019 kb on - strand at 232.037 kb on + strand at 232.038 kb on - strand at 232.070 kb on + strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.099 kb on + strand, within QEN71_RS30715 at 232.099 kb on + strand, within QEN71_RS30715 at 232.100 kb on - strand, within QEN71_RS30715 at 232.289 kb on + strand, within QEN71_RS30715 at 232.289 kb on + strand, within QEN71_RS30715 at 232.289 kb on + strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.412 kb on + strand at 232.413 kb on - strand at 232.803 kb on + strand, within QEN71_RS30720 at 232.803 kb on + strand, within QEN71_RS30720 at 232.803 kb on + strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.854 kb on + strand, within QEN71_RS30720 at 232.855 kb on - strand, within QEN71_RS30720
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 230,504 + -0.3 230,522 + -0.5 230,535 - -0.3 230,538 - +0.0 230,562 + -1.7 230,562 + +0.0 230,562 + +0.4 230,612 + -1.2 230,876 - QEN71_RS30705 0.36 +0.7 230,876 - QEN71_RS30705 0.36 -0.9 230,876 - QEN71_RS30705 0.36 -1.5 231,200 - QEN71_RS30705 0.74 -0.8 231,436 - +1.2 231,436 - +0.6 231,440 + -0.6 231,440 + -0.3 231,440 + -0.4 231,441 - -0.6 231,696 + QEN71_RS30710 0.42 +0.4 231,696 + QEN71_RS30710 0.42 -0.1 231,697 - QEN71_RS30710 0.42 -0.3 231,697 - QEN71_RS30710 0.42 +0.7 231,697 - QEN71_RS30710 0.42 +0.9 231,971 + +1.3 231,971 + -0.1 231,972 - -0.9 231,972 - -0.6 232,001 - +0.3 232,019 - +0.8 232,019 - -0.6 232,037 + -0.5 232,038 - -0.0 232,070 + QEN71_RS30715 0.15 +0.7 232,071 - QEN71_RS30715 0.16 -0.8 232,071 - QEN71_RS30715 0.16 +0.1 232,071 - QEN71_RS30715 0.16 +0.2 232,071 - QEN71_RS30715 0.16 -0.9 232,099 + QEN71_RS30715 0.23 -1.2 232,099 + QEN71_RS30715 0.23 -0.5 232,100 - QEN71_RS30715 0.23 -0.1 232,289 + QEN71_RS30715 0.69 +0.3 232,289 + QEN71_RS30715 0.69 +0.3 232,289 + QEN71_RS30715 0.69 -0.1 232,290 - QEN71_RS30715 0.69 -2.0 232,290 - QEN71_RS30715 0.69 -0.5 232,290 - QEN71_RS30715 0.69 -0.2 232,290 - QEN71_RS30715 0.69 -0.6 232,412 + +0.0 232,413 - +0.2 232,803 + QEN71_RS30720 0.17 +0.3 232,803 + QEN71_RS30720 0.17 +0.1 232,803 + QEN71_RS30720 0.17 +0.1 232,804 - QEN71_RS30720 0.17 +0.2 232,804 - QEN71_RS30720 0.17 +0.1 232,804 - QEN71_RS30720 0.17 -0.5 232,804 - QEN71_RS30720 0.17 +1.0 232,804 - QEN71_RS30720 0.17 -0.9 232,804 - QEN71_RS30720 0.17 +0.3 232,804 - QEN71_RS30720 0.17 +0.7 232,804 - QEN71_RS30720 0.17 -0.8 232,804 - QEN71_RS30720 0.17 -0.3 232,854 + QEN71_RS30720 0.19 -1.8 232,855 - QEN71_RS30720 0.20 +2.0
Or see this region's nucleotide sequence