Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29850

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29845 and QEN71_RS29850 overlap by 4 nucleotidesQEN71_RS29850 and QEN71_RS29855 are separated by 24 nucleotides QEN71_RS29845: QEN71_RS29845 - efflux RND transporter permease subunit, at 36,081 to 39,173 _RS29845 QEN71_RS29850: QEN71_RS29850 - efflux RND transporter permease subunit, at 39,170 to 42,283 _RS29850 QEN71_RS29855: QEN71_RS29855 - efflux RND transporter periplasmic adaptor subunit, at 42,308 to 43,453 _RS29855 Position (kb) 39 40 41 42 43Strain fitness (log2 ratio) -1 0 1 2at 38.452 kb on + strand, within QEN71_RS29845at 38.453 kb on - strand, within QEN71_RS29845at 38.494 kb on + strand, within QEN71_RS29845at 38.495 kb on - strand, within QEN71_RS29845at 38.558 kb on + strand, within QEN71_RS29845at 38.584 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.711 kb on - strand, within QEN71_RS29845at 38.711 kb on - strand, within QEN71_RS29845at 38.748 kb on + strand, within QEN71_RS29845at 38.748 kb on + strand, within QEN71_RS29845at 38.748 kb on + strand, within QEN71_RS29845at 38.788 kb on + strand, within QEN71_RS29845at 38.788 kb on + strand, within QEN71_RS29845at 39.002 kb on + strandat 39.126 kb on + strandat 39.639 kb on + strand, within QEN71_RS29850at 39.926 kb on - strand, within QEN71_RS29850at 39.926 kb on - strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.976 kb on - strand, within QEN71_RS29850at 40.044 kb on + strand, within QEN71_RS29850at 40.060 kb on + strand, within QEN71_RS29850at 40.062 kb on + strand, within QEN71_RS29850at 40.062 kb on + strand, within QEN71_RS29850at 40.062 kb on + strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.099 kb on - strand, within QEN71_RS29850at 40.099 kb on - strand, within QEN71_RS29850at 40.299 kb on + strand, within QEN71_RS29850at 40.354 kb on - strand, within QEN71_RS29850at 41.800 kb on + strand, within QEN71_RS29850at 41.800 kb on + strand, within QEN71_RS29850at 41.800 kb on + strand, within QEN71_RS29850at 41.898 kb on + strand, within QEN71_RS29850at 42.160 kb on - strandat 42.278 kb on - strandat 42.473 kb on + strand, within QEN71_RS29855at 42.799 kb on - strand, within QEN71_RS29855at 42.811 kb on + strand, within QEN71_RS29855at 42.927 kb on + strand, within QEN71_RS29855at 43.013 kb on - strand, within QEN71_RS29855at 43.059 kb on + strand, within QEN71_RS29855at 43.060 kb on - strand, within QEN71_RS29855

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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38,452 + QEN71_RS29845 0.77 -0.8
38,453 - QEN71_RS29845 0.77 -0.9
38,494 + QEN71_RS29845 0.78 +0.8
38,495 - QEN71_RS29845 0.78 +0.0
38,558 + QEN71_RS29845 0.80 +0.0
38,584 + QEN71_RS29845 0.81 +0.4
38,710 + QEN71_RS29845 0.85 +0.5
38,710 + QEN71_RS29845 0.85 -0.8
38,710 + QEN71_RS29845 0.85 +1.0
38,710 + QEN71_RS29845 0.85 -0.3
38,711 - QEN71_RS29845 0.85 -0.4
38,711 - QEN71_RS29845 0.85 -0.3
38,748 + QEN71_RS29845 0.86 -0.4
38,748 + QEN71_RS29845 0.86 +0.0
38,748 + QEN71_RS29845 0.86 -0.8
38,788 + QEN71_RS29845 0.88 -0.2
38,788 + QEN71_RS29845 0.88 -0.3
39,002 + -1.6
39,126 + +0.1
39,639 + QEN71_RS29850 0.15 -0.4
39,926 - QEN71_RS29850 0.24 -0.7
39,926 - QEN71_RS29850 0.24 -1.2
39,975 + QEN71_RS29850 0.26 -1.3
39,975 + QEN71_RS29850 0.26 -0.2
39,975 + QEN71_RS29850 0.26 +0.8
39,975 + QEN71_RS29850 0.26 +0.4
39,975 + QEN71_RS29850 0.26 +0.7
39,975 + QEN71_RS29850 0.26 -0.6
39,976 - QEN71_RS29850 0.26 +0.3
40,044 + QEN71_RS29850 0.28 -0.8
40,060 + QEN71_RS29850 0.29 +0.2
40,062 + QEN71_RS29850 0.29 -0.3
40,062 + QEN71_RS29850 0.29 +0.4
40,062 + QEN71_RS29850 0.29 +0.0
40,063 - QEN71_RS29850 0.29 +0.1
40,063 - QEN71_RS29850 0.29 +0.9
40,063 - QEN71_RS29850 0.29 +0.3
40,063 - QEN71_RS29850 0.29 +0.3
40,063 - QEN71_RS29850 0.29 +0.3
40,099 - QEN71_RS29850 0.30 +0.4
40,099 - QEN71_RS29850 0.30 +0.1
40,299 + QEN71_RS29850 0.36 +0.3
40,354 - QEN71_RS29850 0.38 +0.4
41,800 + QEN71_RS29850 0.84 +1.1
41,800 + QEN71_RS29850 0.84 -1.6
41,800 + QEN71_RS29850 0.84 -0.0
41,898 + QEN71_RS29850 0.88 -1.5
42,160 - -0.6
42,278 - +1.8
42,473 + QEN71_RS29855 0.14 -0.3
42,799 - QEN71_RS29855 0.43 -0.6
42,811 + QEN71_RS29855 0.44 +0.8
42,927 + QEN71_RS29855 0.54 -0.6
43,013 - QEN71_RS29855 0.62 -1.0
43,059 + QEN71_RS29855 0.66 +2.7
43,060 - QEN71_RS29855 0.66 -0.6

Or see this region's nucleotide sequence