Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29765 and QEN71_RS29770 are separated by 20 nucleotides QEN71_RS29770 and QEN71_RS29775 are separated by 329 nucleotides QEN71_RS29775 and QEN71_RS29780 are separated by 202 nucleotides
QEN71_RS29765: QEN71_RS29765 - SDR family oxidoreductase, at 20,862 to 21,878
_RS29765
QEN71_RS29770: QEN71_RS29770 - hypothetical protein, at 21,899 to 22,174
_RS29770
QEN71_RS29775: QEN71_RS29775 - phosphate signaling complex protein PhoU, at 22,504 to 23,211
_RS29775
QEN71_RS29780: QEN71_RS29780 - response regulator, at 23,414 to 24,040
_RS29780
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1
2 at 21.543 kb on + strand, within QEN71_RS29765 at 21.543 kb on + strand, within QEN71_RS29765 at 21.543 kb on + strand, within QEN71_RS29765 at 21.543 kb on + strand, within QEN71_RS29765 at 21.544 kb on - strand, within QEN71_RS29765 at 21.544 kb on - strand, within QEN71_RS29765 at 21.544 kb on - strand, within QEN71_RS29765 at 21.642 kb on + strand, within QEN71_RS29765 at 21.643 kb on - strand, within QEN71_RS29765 at 21.801 kb on - strand at 21.877 kb on - strand at 21.901 kb on - strand at 21.997 kb on - strand, within QEN71_RS29770 at 21.997 kb on - strand, within QEN71_RS29770 at 22.012 kb on + strand, within QEN71_RS29770 at 22.101 kb on + strand, within QEN71_RS29770 at 22.101 kb on + strand, within QEN71_RS29770 at 22.101 kb on + strand, within QEN71_RS29770 at 22.101 kb on + strand, within QEN71_RS29770 at 22.106 kb on + strand, within QEN71_RS29770 at 22.107 kb on - strand, within QEN71_RS29770 at 22.406 kb on + strand at 22.406 kb on + strand at 22.407 kb on - strand at 22.407 kb on - strand at 22.407 kb on - strand at 22.408 kb on + strand at 22.408 kb on + strand at 22.410 kb on + strand at 22.548 kb on + strand at 22.549 kb on - strand at 22.627 kb on + strand, within QEN71_RS29775 at 22.628 kb on - strand, within QEN71_RS29775 at 22.628 kb on - strand, within QEN71_RS29775 at 22.694 kb on + strand, within QEN71_RS29775 at 22.706 kb on + strand, within QEN71_RS29775 at 22.707 kb on - strand, within QEN71_RS29775 at 22.707 kb on - strand, within QEN71_RS29775 at 22.707 kb on - strand, within QEN71_RS29775 at 22.707 kb on - strand, within QEN71_RS29775 at 22.707 kb on - strand, within QEN71_RS29775 at 23.071 kb on + strand, within QEN71_RS29775 at 23.072 kb on - strand, within QEN71_RS29775 at 23.209 kb on + strand at 23.209 kb on + strand at 23.382 kb on + strand at 23.383 kb on - strand at 23.383 kb on - strand at 23.383 kb on - strand at 23.383 kb on - strand at 23.383 kb on - strand at 23.383 kb on - strand at 23.386 kb on + strand at 23.386 kb on + strand at 23.387 kb on - strand at 23.424 kb on + strand at 23.424 kb on + strand at 23.428 kb on - strand at 23.428 kb on - strand at 23.557 kb on + strand, within QEN71_RS29780 at 23.558 kb on - strand, within QEN71_RS29780 at 23.558 kb on - strand, within QEN71_RS29780 at 23.558 kb on - strand, within QEN71_RS29780 at 24.038 kb on + strand at 24.039 kb on - strand at 24.039 kb on - strand at 24.039 kb on - strand at 24.039 kb on - strand at 24.039 kb on - strand at 24.091 kb on + strand at 24.153 kb on + strand at 24.154 kb on - strand at 24.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 21,543 + QEN71_RS29765 0.67 -1.6 21,543 + QEN71_RS29765 0.67 +1.1 21,543 + QEN71_RS29765 0.67 -0.5 21,543 + QEN71_RS29765 0.67 +0.7 21,544 - QEN71_RS29765 0.67 -0.3 21,544 - QEN71_RS29765 0.67 -0.6 21,544 - QEN71_RS29765 0.67 -0.7 21,642 + QEN71_RS29765 0.77 +0.1 21,643 - QEN71_RS29765 0.77 -0.2 21,801 - +0.1 21,877 - +0.0 21,901 - -2.6 21,997 - QEN71_RS29770 0.36 +0.1 21,997 - QEN71_RS29770 0.36 +0.6 22,012 + QEN71_RS29770 0.41 +0.8 22,101 + QEN71_RS29770 0.73 +0.9 22,101 + QEN71_RS29770 0.73 +0.4 22,101 + QEN71_RS29770 0.73 +0.7 22,101 + QEN71_RS29770 0.73 -0.6 22,106 + QEN71_RS29770 0.75 -1.9 22,107 - QEN71_RS29770 0.75 +1.6 22,406 + +0.6 22,406 + +0.5 22,407 - +0.4 22,407 - -0.6 22,407 - +0.3 22,408 + +0.5 22,408 + +0.2 22,410 + +0.3 22,548 + +0.3 22,549 - +0.1 22,627 + QEN71_RS29775 0.17 -0.9 22,628 - QEN71_RS29775 0.18 -0.6 22,628 - QEN71_RS29775 0.18 +0.5 22,694 + QEN71_RS29775 0.27 +0.4 22,706 + QEN71_RS29775 0.29 -0.4 22,707 - QEN71_RS29775 0.29 -0.6 22,707 - QEN71_RS29775 0.29 +1.0 22,707 - QEN71_RS29775 0.29 +0.1 22,707 - QEN71_RS29775 0.29 +0.0 22,707 - QEN71_RS29775 0.29 -0.3 23,071 + QEN71_RS29775 0.80 -0.2 23,072 - QEN71_RS29775 0.80 +0.4 23,209 + +0.3 23,209 + -1.6 23,382 + +1.5 23,383 - +0.4 23,383 - -0.2 23,383 - +0.0 23,383 - -0.3 23,383 - -0.8 23,383 - +0.6 23,386 + +0.2 23,386 + +0.5 23,387 - -0.2 23,424 + +0.0 23,424 + +0.2 23,428 - +0.8 23,428 - +0.6 23,557 + QEN71_RS29780 0.23 +0.0 23,558 - QEN71_RS29780 0.23 +0.9 23,558 - QEN71_RS29780 0.23 +0.2 23,558 - QEN71_RS29780 0.23 +0.3 24,038 + +0.3 24,039 - +0.0 24,039 - +0.6 24,039 - -1.3 24,039 - +0.4 24,039 - +0.9 24,091 + -0.1 24,153 + -0.8 24,154 - -1.1 24,154 - +2.0
Or see this region's nucleotide sequence