Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21790

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21785 and QEN71_RS21790 are separated by 40 nucleotidesQEN71_RS21790 and QEN71_RS21795 are separated by 253 nucleotidesQEN71_RS21795 and QEN71_RS21800 are separated by 118 nucleotides QEN71_RS21785: QEN71_RS21785 - AAA family ATPase, at 4,833,151 to 4,834,314 _RS21785 QEN71_RS21790: QEN71_RS21790 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 4,834,355 to 4,835,785 _RS21790 QEN71_RS21795: QEN71_RS21795 - Rap1a/Tai family immunity protein, at 4,836,039 to 4,836,395 _RS21795 QEN71_RS21800: QEN71_RS21800 - ankyrin repeat domain-containing protein, at 4,836,514 to 4,837,260 _RS21800 Position (kb) 4834 4835 4836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4833.441 kb on - strand, within QEN71_RS21785at 4833.660 kb on + strand, within QEN71_RS21785at 4833.660 kb on + strand, within QEN71_RS21785at 4833.660 kb on + strand, within QEN71_RS21785at 4833.661 kb on - strand, within QEN71_RS21785at 4833.661 kb on - strand, within QEN71_RS21785at 4833.719 kb on + strand, within QEN71_RS21785at 4833.719 kb on + strand, within QEN71_RS21785at 4833.719 kb on + strand, within QEN71_RS21785at 4833.720 kb on - strand, within QEN71_RS21785at 4833.720 kb on - strand, within QEN71_RS21785at 4833.720 kb on - strand, within QEN71_RS21785at 4833.819 kb on + strand, within QEN71_RS21785at 4833.820 kb on - strand, within QEN71_RS21785at 4833.908 kb on - strand, within QEN71_RS21785at 4833.999 kb on - strand, within QEN71_RS21785at 4834.192 kb on + strand, within QEN71_RS21785at 4834.192 kb on + strand, within QEN71_RS21785at 4834.193 kb on - strand, within QEN71_RS21785at 4834.203 kb on - strandat 4834.203 kb on - strandat 4834.286 kb on + strandat 4834.287 kb on - strandat 4834.331 kb on + strandat 4834.662 kb on + strand, within QEN71_RS21790at 4834.755 kb on + strand, within QEN71_RS21790at 4834.755 kb on + strand, within QEN71_RS21790at 4834.755 kb on + strand, within QEN71_RS21790at 4834.755 kb on + strand, within QEN71_RS21790at 4834.756 kb on - strand, within QEN71_RS21790at 4834.756 kb on - strand, within QEN71_RS21790at 4834.785 kb on + strand, within QEN71_RS21790at 4834.785 kb on + strand, within QEN71_RS21790at 4834.785 kb on + strand, within QEN71_RS21790at 4834.786 kb on - strand, within QEN71_RS21790at 4834.854 kb on + strand, within QEN71_RS21790at 4834.854 kb on + strand, within QEN71_RS21790at 4834.855 kb on - strand, within QEN71_RS21790at 4834.855 kb on - strand, within QEN71_RS21790at 4834.855 kb on - strand, within QEN71_RS21790at 4834.977 kb on + strand, within QEN71_RS21790at 4834.978 kb on - strand, within QEN71_RS21790at 4835.187 kb on + strand, within QEN71_RS21790at 4835.187 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.239 kb on - strand, within QEN71_RS21790at 4835.239 kb on - strand, within QEN71_RS21790at 4835.382 kb on + strand, within QEN71_RS21790at 4835.382 kb on + strand, within QEN71_RS21790at 4835.383 kb on - strand, within QEN71_RS21790at 4835.469 kb on + strand, within QEN71_RS21790at 4835.469 kb on + strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.547 kb on + strand, within QEN71_RS21790at 4835.548 kb on - strand, within QEN71_RS21790at 4835.548 kb on - strand, within QEN71_RS21790at 4835.550 kb on + strand, within QEN71_RS21790at 4835.551 kb on - strand, within QEN71_RS21790at 4835.559 kb on + strand, within QEN71_RS21790at 4835.559 kb on + strand, within QEN71_RS21790at 4835.559 kb on + strand, within QEN71_RS21790at 4835.560 kb on - strand, within QEN71_RS21790at 4835.560 kb on - strand, within QEN71_RS21790at 4835.560 kb on - strand, within QEN71_RS21790at 4835.708 kb on + strandat 4835.914 kb on + strandat 4835.933 kb on + strandat 4835.934 kb on - strandat 4835.934 kb on - strandat 4835.976 kb on - strandat 4835.976 kb on - strandat 4836.030 kb on + strandat 4836.101 kb on + strand, within QEN71_RS21795at 4836.102 kb on - strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.104 kb on - strand, within QEN71_RS21795at 4836.104 kb on - strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.190 kb on + strand, within QEN71_RS21795at 4836.191 kb on - strand, within QEN71_RS21795at 4836.191 kb on - strand, within QEN71_RS21795at 4836.267 kb on - strand, within QEN71_RS21795at 4836.267 kb on - strand, within QEN71_RS21795at 4836.268 kb on + strand, within QEN71_RS21795at 4836.268 kb on + strand, within QEN71_RS21795at 4836.268 kb on + strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.284 kb on + strand, within QEN71_RS21795at 4836.515 kb on + strandat 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.769 kb on - strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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4,833,441 - QEN71_RS21785 0.25 -0.3
4,833,660 + QEN71_RS21785 0.44 +0.2
4,833,660 + QEN71_RS21785 0.44 -0.0
4,833,660 + QEN71_RS21785 0.44 +0.6
4,833,661 - QEN71_RS21785 0.44 +0.2
4,833,661 - QEN71_RS21785 0.44 +0.3
4,833,719 + QEN71_RS21785 0.49 -0.5
4,833,719 + QEN71_RS21785 0.49 +0.9
4,833,719 + QEN71_RS21785 0.49 -0.1
4,833,720 - QEN71_RS21785 0.49 +0.9
4,833,720 - QEN71_RS21785 0.49 -1.5
4,833,720 - QEN71_RS21785 0.49 -1.1
4,833,819 + QEN71_RS21785 0.57 +0.0
4,833,820 - QEN71_RS21785 0.57 +0.2
4,833,908 - QEN71_RS21785 0.65 -0.2
4,833,999 - QEN71_RS21785 0.73 +0.7
4,834,192 + QEN71_RS21785 0.89 -0.2
4,834,192 + QEN71_RS21785 0.89 +0.2
4,834,193 - QEN71_RS21785 0.90 +0.4
4,834,203 - +0.6
4,834,203 - +0.5
4,834,286 + +0.7
4,834,287 - +0.7
4,834,331 + -0.3
4,834,662 + QEN71_RS21790 0.21 +1.1
4,834,755 + QEN71_RS21790 0.28 -1.0
4,834,755 + QEN71_RS21790 0.28 +0.1
4,834,755 + QEN71_RS21790 0.28 +0.1
4,834,755 + QEN71_RS21790 0.28 -0.1
4,834,756 - QEN71_RS21790 0.28 +0.4
4,834,756 - QEN71_RS21790 0.28 -0.2
4,834,785 + QEN71_RS21790 0.30 +1.3
4,834,785 + QEN71_RS21790 0.30 +0.1
4,834,785 + QEN71_RS21790 0.30 +0.4
4,834,786 - QEN71_RS21790 0.30 -0.2
4,834,854 + QEN71_RS21790 0.35 -0.4
4,834,854 + QEN71_RS21790 0.35 +0.9
4,834,855 - QEN71_RS21790 0.35 -0.5
4,834,855 - QEN71_RS21790 0.35 -0.5
4,834,855 - QEN71_RS21790 0.35 +0.7
4,834,977 + QEN71_RS21790 0.43 +0.5
4,834,978 - QEN71_RS21790 0.44 -0.2
4,835,187 + QEN71_RS21790 0.58 +0.3
4,835,187 + QEN71_RS21790 0.58 -2.0
4,835,238 + QEN71_RS21790 0.62 -0.5
4,835,238 + QEN71_RS21790 0.62 +1.2
4,835,238 + QEN71_RS21790 0.62 -0.1
4,835,238 + QEN71_RS21790 0.62 -0.4
4,835,238 + QEN71_RS21790 0.62 +0.4
4,835,238 + QEN71_RS21790 0.62 +0.6
4,835,239 - QEN71_RS21790 0.62 -3.3
4,835,239 - QEN71_RS21790 0.62 +0.3
4,835,382 + QEN71_RS21790 0.72 -0.1
4,835,382 + QEN71_RS21790 0.72 +0.7
4,835,383 - QEN71_RS21790 0.72 -0.7
4,835,469 + QEN71_RS21790 0.78 +0.4
4,835,469 + QEN71_RS21790 0.78 -0.1
4,835,470 - QEN71_RS21790 0.78 -0.3
4,835,470 - QEN71_RS21790 0.78 +0.4
4,835,470 - QEN71_RS21790 0.78 +0.3
4,835,470 - QEN71_RS21790 0.78 +0.9
4,835,470 - QEN71_RS21790 0.78 +0.3
4,835,470 - QEN71_RS21790 0.78 +0.4
4,835,470 - QEN71_RS21790 0.78 -0.5
4,835,470 - QEN71_RS21790 0.78 -0.7
4,835,470 - QEN71_RS21790 0.78 +0.0
4,835,547 + QEN71_RS21790 0.83 -0.1
4,835,548 - QEN71_RS21790 0.83 -0.1
4,835,548 - QEN71_RS21790 0.83 -0.5
4,835,550 + QEN71_RS21790 0.84 +0.5
4,835,551 - QEN71_RS21790 0.84 +0.9
4,835,559 + QEN71_RS21790 0.84 -0.3
4,835,559 + QEN71_RS21790 0.84 +0.9
4,835,559 + QEN71_RS21790 0.84 +1.4
4,835,560 - QEN71_RS21790 0.84 +0.9
4,835,560 - QEN71_RS21790 0.84 +0.7
4,835,560 - QEN71_RS21790 0.84 +1.3
4,835,708 + -0.3
4,835,914 + -0.3
4,835,933 + +0.4
4,835,934 - +0.1
4,835,934 - -0.8
4,835,976 - -0.1
4,835,976 - -0.5
4,836,030 + +0.2
4,836,101 + QEN71_RS21795 0.17 -0.4
4,836,102 - QEN71_RS21795 0.18 -0.7
4,836,103 + QEN71_RS21795 0.18 -1.4
4,836,103 + QEN71_RS21795 0.18 +0.0
4,836,103 + QEN71_RS21795 0.18 +0.2
4,836,103 + QEN71_RS21795 0.18 -0.1
4,836,103 + QEN71_RS21795 0.18 +0.5
4,836,103 + QEN71_RS21795 0.18 +0.3
4,836,104 - QEN71_RS21795 0.18 -0.6
4,836,104 - QEN71_RS21795 0.18 -1.8
4,836,133 + QEN71_RS21795 0.26 +0.7
4,836,133 + QEN71_RS21795 0.26 +0.7
4,836,133 + QEN71_RS21795 0.26 +1.5
4,836,133 + QEN71_RS21795 0.26 +0.2
4,836,133 + QEN71_RS21795 0.26 -0.4
4,836,134 - QEN71_RS21795 0.27 -0.8
4,836,134 - QEN71_RS21795 0.27 -1.0
4,836,134 - QEN71_RS21795 0.27 +0.6
4,836,134 - QEN71_RS21795 0.27 +1.4
4,836,134 - QEN71_RS21795 0.27 +0.4
4,836,134 - QEN71_RS21795 0.27 +1.4
4,836,134 - QEN71_RS21795 0.27 -1.0
4,836,134 - QEN71_RS21795 0.27 -0.1
4,836,134 - QEN71_RS21795 0.27 +0.1
4,836,134 - QEN71_RS21795 0.27 +0.9
4,836,134 - QEN71_RS21795 0.27 -0.4
4,836,190 + QEN71_RS21795 0.42 -0.2
4,836,191 - QEN71_RS21795 0.43 +1.5
4,836,191 - QEN71_RS21795 0.43 -1.6
4,836,267 - QEN71_RS21795 0.64 +0.1
4,836,267 - QEN71_RS21795 0.64 -0.1
4,836,268 + QEN71_RS21795 0.64 -1.8
4,836,268 + QEN71_RS21795 0.64 +0.1
4,836,268 + QEN71_RS21795 0.64 +0.1
4,836,269 - QEN71_RS21795 0.64 -1.0
4,836,269 - QEN71_RS21795 0.64 -0.5
4,836,269 - QEN71_RS21795 0.64 +0.4
4,836,269 - QEN71_RS21795 0.64 +1.1
4,836,269 - QEN71_RS21795 0.64 +0.3
4,836,269 - QEN71_RS21795 0.64 +1.0
4,836,269 - QEN71_RS21795 0.64 -0.1
4,836,269 - QEN71_RS21795 0.64 +0.0
4,836,284 + QEN71_RS21795 0.69 -0.0
4,836,515 + -0.4
4,836,617 + QEN71_RS21800 0.14 -0.2
4,836,617 + QEN71_RS21800 0.14 -0.1
4,836,617 + QEN71_RS21800 0.14 +0.5
4,836,617 + QEN71_RS21800 0.14 +0.4
4,836,617 + QEN71_RS21800 0.14 +0.2
4,836,617 + QEN71_RS21800 0.14 +0.3
4,836,617 + QEN71_RS21800 0.14 +0.4
4,836,617 + QEN71_RS21800 0.14 -0.6
4,836,618 - QEN71_RS21800 0.14 -1.0
4,836,618 - QEN71_RS21800 0.14 +0.7
4,836,618 - QEN71_RS21800 0.14 +0.4
4,836,618 - QEN71_RS21800 0.14 -1.4
4,836,618 - QEN71_RS21800 0.14 -0.4
4,836,618 - QEN71_RS21800 0.14 +0.6
4,836,768 + QEN71_RS21800 0.34 -0.3
4,836,768 + QEN71_RS21800 0.34 -0.6
4,836,768 + QEN71_RS21800 0.34 -0.2
4,836,769 - QEN71_RS21800 0.34 +0.2
4,836,770 + QEN71_RS21800 0.34 +1.9
4,836,770 + QEN71_RS21800 0.34 +0.3
4,836,770 + QEN71_RS21800 0.34 +0.2
4,836,770 + QEN71_RS21800 0.34 -0.4
4,836,770 + QEN71_RS21800 0.34 -1.3
4,836,770 + QEN71_RS21800 0.34 +0.7
4,836,770 + QEN71_RS21800 0.34 +0.6
4,836,770 + QEN71_RS21800 0.34 +0.3
4,836,770 + QEN71_RS21800 0.34 -0.1
4,836,770 + QEN71_RS21800 0.34 +0.3
4,836,770 + QEN71_RS21800 0.34 +0.0
4,836,770 + QEN71_RS21800 0.34 +0.9
4,836,771 - QEN71_RS21800 0.34 -0.7
4,836,771 - QEN71_RS21800 0.34 -0.1
4,836,771 - QEN71_RS21800 0.34 +0.1
4,836,771 - QEN71_RS21800 0.34 +0.3
4,836,771 - QEN71_RS21800 0.34 -1.1
4,836,771 - QEN71_RS21800 0.34 +0.9
4,836,771 - QEN71_RS21800 0.34 -0.5
4,836,771 - QEN71_RS21800 0.34 +1.0
4,836,771 - QEN71_RS21800 0.34 +0.3

Or see this region's nucleotide sequence