Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS06915 and QEN71_RS06920 are separated by 107 nucleotides QEN71_RS06920 and QEN71_RS06925 overlap by 4 nucleotides QEN71_RS06925 and QEN71_RS06930 are separated by 10 nucleotides QEN71_RS06930 and QEN71_RS06935 overlap by 1 nucleotides
QEN71_RS06915: QEN71_RS06915 - hypothetical protein, at 1,534,691 to 1,536,031
_RS06915
QEN71_RS06920: QEN71_RS06920 - LA2681 family HEPN domain-containing protein, at 1,536,139 to 1,536,723
_RS06920
QEN71_RS06925: QEN71_RS06925 - DEAD/DEAH box helicase, at 1,536,720 to 1,539,740
_RS06925
QEN71_RS06930: QEN71_RS06930 - antitoxin, at 1,539,751 to 1,540,647
_RS06930
QEN71_RS06935: QEN71_RS06935 - hypothetical protein, at 1,540,647 to 1,541,741
_RS06935
Position (kb) 1536
1537
1538
1539
1540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1535.738 kb on + strand, within QEN71_RS06915 at 1535.777 kb on + strand, within QEN71_RS06915 at 1535.873 kb on + strand, within QEN71_RS06915 at 1535.905 kb on + strand at 1535.905 kb on + strand at 1535.905 kb on + strand at 1535.905 kb on + strand at 1535.905 kb on + strand at 1535.906 kb on - strand at 1535.906 kb on - strand at 1535.906 kb on - strand at 1535.947 kb on + strand at 1535.947 kb on + strand at 1535.948 kb on - strand at 1535.948 kb on - strand at 1535.948 kb on - strand at 1535.976 kb on + strand at 1535.976 kb on + strand at 1535.977 kb on - strand at 1535.977 kb on - strand at 1535.977 kb on - strand at 1536.040 kb on + strand at 1536.041 kb on - strand at 1536.041 kb on - strand at 1536.041 kb on - strand at 1536.044 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.103 kb on + strand at 1536.104 kb on - strand at 1536.104 kb on - strand at 1536.185 kb on + strand at 1536.185 kb on + strand at 1536.185 kb on + strand at 1536.185 kb on + strand at 1536.186 kb on - strand at 1536.189 kb on + strand at 1536.189 kb on + strand at 1536.189 kb on + strand at 1536.189 kb on + strand at 1536.189 kb on + strand at 1536.190 kb on - strand at 1536.190 kb on - strand at 1536.190 kb on - strand at 1536.229 kb on - strand, within QEN71_RS06920 at 1536.229 kb on - strand, within QEN71_RS06920 at 1536.332 kb on + strand, within QEN71_RS06920 at 1536.333 kb on - strand, within QEN71_RS06920 at 1536.400 kb on + strand, within QEN71_RS06920 at 1536.657 kb on - strand, within QEN71_RS06920 at 1536.684 kb on - strand at 1536.701 kb on + strand at 1536.701 kb on + strand at 1536.702 kb on - strand at 1536.702 kb on - strand at 1536.702 kb on - strand at 1536.759 kb on + strand at 1536.759 kb on + strand at 1536.759 kb on + strand at 1536.759 kb on + strand at 1536.759 kb on + strand at 1536.759 kb on + strand at 1536.760 kb on - strand at 1536.760 kb on - strand at 1536.760 kb on - strand at 1536.760 kb on - strand at 1536.894 kb on - strand at 1536.894 kb on - strand at 1537.186 kb on + strand, within QEN71_RS06925 at 1537.187 kb on - strand, within QEN71_RS06925 at 1537.282 kb on + strand, within QEN71_RS06925 at 1537.283 kb on - strand, within QEN71_RS06925 at 1537.283 kb on - strand, within QEN71_RS06925 at 1537.283 kb on - strand, within QEN71_RS06925 at 1537.306 kb on - strand, within QEN71_RS06925 at 1537.306 kb on - strand, within QEN71_RS06925 at 1537.306 kb on - strand, within QEN71_RS06925 at 1537.306 kb on - strand, within QEN71_RS06925 at 1537.347 kb on + strand, within QEN71_RS06925 at 1537.348 kb on - strand, within QEN71_RS06925 at 1537.501 kb on - strand, within QEN71_RS06925 at 1537.501 kb on - strand, within QEN71_RS06925 at 1537.552 kb on + strand, within QEN71_RS06925 at 1537.694 kb on - strand, within QEN71_RS06925 at 1537.790 kb on + strand, within QEN71_RS06925 at 1537.791 kb on - strand, within QEN71_RS06925 at 1537.791 kb on - strand, within QEN71_RS06925 at 1537.934 kb on + strand, within QEN71_RS06925 at 1537.939 kb on + strand, within QEN71_RS06925 at 1538.008 kb on - strand, within QEN71_RS06925 at 1538.107 kb on + strand, within QEN71_RS06925 at 1538.108 kb on - strand, within QEN71_RS06925 at 1538.108 kb on - strand, within QEN71_RS06925 at 1538.290 kb on + strand, within QEN71_RS06925 at 1538.291 kb on - strand, within QEN71_RS06925 at 1538.291 kb on - strand, within QEN71_RS06925 at 1538.355 kb on + strand, within QEN71_RS06925 at 1538.355 kb on + strand, within QEN71_RS06925 at 1538.356 kb on - strand, within QEN71_RS06925 at 1538.356 kb on - strand, within QEN71_RS06925 at 1538.435 kb on + strand, within QEN71_RS06925 at 1538.523 kb on + strand, within QEN71_RS06925 at 1538.523 kb on + strand, within QEN71_RS06925 at 1538.526 kb on + strand, within QEN71_RS06925 at 1538.526 kb on + strand, within QEN71_RS06925 at 1538.591 kb on - strand, within QEN71_RS06925 at 1538.591 kb on - strand, within QEN71_RS06925 at 1538.611 kb on + strand, within QEN71_RS06925 at 1538.612 kb on - strand, within QEN71_RS06925 at 1538.612 kb on - strand, within QEN71_RS06925 at 1538.667 kb on + strand, within QEN71_RS06925 at 1538.667 kb on + strand, within QEN71_RS06925 at 1538.668 kb on - strand, within QEN71_RS06925 at 1538.689 kb on + strand, within QEN71_RS06925 at 1538.742 kb on + strand, within QEN71_RS06925 at 1538.743 kb on - strand, within QEN71_RS06925 at 1538.743 kb on - strand, within QEN71_RS06925 at 1539.013 kb on + strand, within QEN71_RS06925 at 1539.013 kb on + strand, within QEN71_RS06925 at 1539.013 kb on + strand, within QEN71_RS06925 at 1539.013 kb on + strand, within QEN71_RS06925 at 1539.013 kb on + strand, within QEN71_RS06925 at 1539.013 kb on + strand, within QEN71_RS06925 at 1539.013 kb on + strand, within QEN71_RS06925 at 1539.014 kb on - strand, within QEN71_RS06925 at 1539.014 kb on - strand, within QEN71_RS06925 at 1539.014 kb on - strand, within QEN71_RS06925 at 1539.014 kb on - strand, within QEN71_RS06925 at 1539.014 kb on - strand, within QEN71_RS06925 at 1539.014 kb on - strand, within QEN71_RS06925 at 1539.014 kb on - strand, within QEN71_RS06925 at 1539.200 kb on + strand, within QEN71_RS06925 at 1539.200 kb on + strand, within QEN71_RS06925 at 1539.200 kb on + strand, within QEN71_RS06925 at 1539.200 kb on + strand, within QEN71_RS06925 at 1539.200 kb on + strand, within QEN71_RS06925 at 1539.200 kb on + strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.201 kb on - strand, within QEN71_RS06925 at 1539.204 kb on + strand, within QEN71_RS06925 at 1539.204 kb on + strand, within QEN71_RS06925 at 1539.283 kb on + strand, within QEN71_RS06925 at 1539.283 kb on + strand, within QEN71_RS06925 at 1539.283 kb on + strand, within QEN71_RS06925 at 1539.356 kb on + strand, within QEN71_RS06925 at 1539.374 kb on + strand, within QEN71_RS06925 at 1539.374 kb on + strand, within QEN71_RS06925 at 1539.374 kb on + strand, within QEN71_RS06925 at 1539.374 kb on + strand, within QEN71_RS06925 at 1539.375 kb on - strand, within QEN71_RS06925 at 1539.375 kb on - strand, within QEN71_RS06925 at 1539.570 kb on + strand at 1539.570 kb on + strand at 1539.571 kb on - strand at 1539.571 kb on - strand at 1539.571 kb on - strand at 1539.624 kb on + strand at 1539.624 kb on + strand at 1539.624 kb on + strand at 1539.624 kb on + strand at 1539.624 kb on + strand at 1539.625 kb on - strand at 1539.625 kb on - strand at 1539.625 kb on - strand at 1539.625 kb on - strand at 1539.717 kb on + strand at 1539.717 kb on + strand at 1539.717 kb on + strand at 1539.717 kb on + strand at 1539.718 kb on - strand at 1539.718 kb on - strand at 1539.718 kb on - strand at 1539.720 kb on + strand at 1539.720 kb on + strand at 1539.720 kb on + strand at 1539.720 kb on + strand at 1539.720 kb on + strand at 1539.721 kb on - strand at 1539.721 kb on - strand at 1539.721 kb on - strand at 1539.721 kb on - strand at 1540.031 kb on + strand, within QEN71_RS06930 at 1540.031 kb on + strand, within QEN71_RS06930 at 1540.032 kb on - strand, within QEN71_RS06930 at 1540.032 kb on - strand, within QEN71_RS06930 at 1540.032 kb on - strand, within QEN71_RS06930 at 1540.032 kb on - strand, within QEN71_RS06930 at 1540.032 kb on - strand, within QEN71_RS06930 at 1540.032 kb on - strand, within QEN71_RS06930 at 1540.032 kb on - strand, within QEN71_RS06930 at 1540.213 kb on - strand, within QEN71_RS06930 at 1540.252 kb on + strand, within QEN71_RS06930 at 1540.252 kb on + strand, within QEN71_RS06930 at 1540.252 kb on + strand, within QEN71_RS06930 at 1540.252 kb on + strand, within QEN71_RS06930 at 1540.252 kb on + strand, within QEN71_RS06930 at 1540.253 kb on - strand, within QEN71_RS06930 at 1540.288 kb on + strand, within QEN71_RS06930 at 1540.289 kb on - strand, within QEN71_RS06930 at 1540.412 kb on + strand, within QEN71_RS06930 at 1540.412 kb on + strand, within QEN71_RS06930 at 1540.413 kb on - strand, within QEN71_RS06930 at 1540.413 kb on - strand, within QEN71_RS06930 at 1540.467 kb on + strand, within QEN71_RS06930 at 1540.467 kb on + strand, within QEN71_RS06930 at 1540.467 kb on + strand, within QEN71_RS06930 at 1540.467 kb on + strand, within QEN71_RS06930 at 1540.468 kb on - strand, within QEN71_RS06930 at 1540.538 kb on + strand, within QEN71_RS06930 at 1540.608 kb on - strand at 1540.619 kb on + strand at 1540.619 kb on + strand at 1540.620 kb on - strand at 1540.620 kb on - strand at 1540.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 1,535,738 + QEN71_RS06915 0.78 +0.4 1,535,777 + QEN71_RS06915 0.81 +0.2 1,535,873 + QEN71_RS06915 0.88 +0.3 1,535,905 + -0.4 1,535,905 + +1.5 1,535,905 + +0.9 1,535,905 + +0.1 1,535,905 + -0.8 1,535,906 - -0.3 1,535,906 - -0.2 1,535,906 - -0.4 1,535,947 + -0.5 1,535,947 + +0.9 1,535,948 - +0.3 1,535,948 - +1.0 1,535,948 - +0.3 1,535,976 + -0.6 1,535,976 + -0.9 1,535,977 - +1.1 1,535,977 - -0.3 1,535,977 - +0.2 1,536,040 + -0.0 1,536,041 - +0.3 1,536,041 - +0.5 1,536,041 - -1.7 1,536,044 + -0.9 1,536,103 + -0.1 1,536,103 + -0.6 1,536,103 + -0.3 1,536,103 + -1.0 1,536,103 + +0.5 1,536,103 + +0.1 1,536,103 + -3.6 1,536,103 + +1.5 1,536,103 + +0.6 1,536,104 - +0.4 1,536,104 - +0.4 1,536,185 + -0.0 1,536,185 + -0.7 1,536,185 + -0.5 1,536,185 + +0.6 1,536,186 - +0.6 1,536,189 + -0.6 1,536,189 + +0.1 1,536,189 + -0.7 1,536,189 + +0.4 1,536,189 + +0.0 1,536,190 - +0.9 1,536,190 - -1.7 1,536,190 - -0.1 1,536,229 - QEN71_RS06920 0.15 +1.3 1,536,229 - QEN71_RS06920 0.15 +1.0 1,536,332 + QEN71_RS06920 0.33 -1.0 1,536,333 - QEN71_RS06920 0.33 +0.5 1,536,400 + QEN71_RS06920 0.45 -0.1 1,536,657 - QEN71_RS06920 0.89 -2.2 1,536,684 - -0.4 1,536,701 + -0.6 1,536,701 + -1.1 1,536,702 - -1.1 1,536,702 - -0.3 1,536,702 - -0.7 1,536,759 + -0.1 1,536,759 + +0.3 1,536,759 + -0.1 1,536,759 + -0.4 1,536,759 + -0.2 1,536,759 + +0.1 1,536,760 - +0.3 1,536,760 - -0.2 1,536,760 - -1.0 1,536,760 - -0.6 1,536,894 - -1.6 1,536,894 - +0.1 1,537,186 + QEN71_RS06925 0.15 -0.1 1,537,187 - QEN71_RS06925 0.15 +0.3 1,537,282 + QEN71_RS06925 0.19 -2.0 1,537,283 - QEN71_RS06925 0.19 -0.2 1,537,283 - QEN71_RS06925 0.19 -3.1 1,537,283 - QEN71_RS06925 0.19 -1.2 1,537,306 - QEN71_RS06925 0.19 +0.8 1,537,306 - QEN71_RS06925 0.19 -0.1 1,537,306 - QEN71_RS06925 0.19 +1.0 1,537,306 - QEN71_RS06925 0.19 +0.4 1,537,347 + QEN71_RS06925 0.21 -0.7 1,537,348 - QEN71_RS06925 0.21 -1.0 1,537,501 - QEN71_RS06925 0.26 -1.5 1,537,501 - QEN71_RS06925 0.26 +0.9 1,537,552 + QEN71_RS06925 0.28 -0.1 1,537,694 - QEN71_RS06925 0.32 -0.0 1,537,790 + QEN71_RS06925 0.35 -2.6 1,537,791 - QEN71_RS06925 0.35 +0.2 1,537,791 - QEN71_RS06925 0.35 -0.2 1,537,934 + QEN71_RS06925 0.40 +0.5 1,537,939 + QEN71_RS06925 0.40 -0.9 1,538,008 - QEN71_RS06925 0.43 -0.1 1,538,107 + QEN71_RS06925 0.46 +0.8 1,538,108 - QEN71_RS06925 0.46 +0.6 1,538,108 - QEN71_RS06925 0.46 -1.6 1,538,290 + QEN71_RS06925 0.52 +0.8 1,538,291 - QEN71_RS06925 0.52 -0.3 1,538,291 - QEN71_RS06925 0.52 -2.3 1,538,355 + QEN71_RS06925 0.54 -0.2 1,538,355 + QEN71_RS06925 0.54 -0.3 1,538,356 - QEN71_RS06925 0.54 +0.2 1,538,356 - QEN71_RS06925 0.54 -1.6 1,538,435 + QEN71_RS06925 0.57 -0.5 1,538,523 + QEN71_RS06925 0.60 -0.1 1,538,523 + QEN71_RS06925 0.60 -0.1 1,538,526 + QEN71_RS06925 0.60 -1.1 1,538,526 + QEN71_RS06925 0.60 -0.4 1,538,591 - QEN71_RS06925 0.62 -0.5 1,538,591 - QEN71_RS06925 0.62 +0.5 1,538,611 + QEN71_RS06925 0.63 +0.1 1,538,612 - QEN71_RS06925 0.63 -1.0 1,538,612 - QEN71_RS06925 0.63 -0.7 1,538,667 + QEN71_RS06925 0.64 +0.7 1,538,667 + QEN71_RS06925 0.64 +1.1 1,538,668 - QEN71_RS06925 0.64 -0.5 1,538,689 + QEN71_RS06925 0.65 -2.3 1,538,742 + QEN71_RS06925 0.67 -1.5 1,538,743 - QEN71_RS06925 0.67 -0.5 1,538,743 - QEN71_RS06925 0.67 +0.5 1,539,013 + QEN71_RS06925 0.76 +0.0 1,539,013 + QEN71_RS06925 0.76 +0.1 1,539,013 + QEN71_RS06925 0.76 -0.2 1,539,013 + QEN71_RS06925 0.76 +0.6 1,539,013 + QEN71_RS06925 0.76 +0.6 1,539,013 + QEN71_RS06925 0.76 -0.2 1,539,013 + QEN71_RS06925 0.76 +0.8 1,539,014 - QEN71_RS06925 0.76 -0.2 1,539,014 - QEN71_RS06925 0.76 +1.1 1,539,014 - QEN71_RS06925 0.76 +1.6 1,539,014 - QEN71_RS06925 0.76 -0.1 1,539,014 - QEN71_RS06925 0.76 -0.0 1,539,014 - QEN71_RS06925 0.76 +0.3 1,539,014 - QEN71_RS06925 0.76 -2.2 1,539,200 + QEN71_RS06925 0.82 +0.3 1,539,200 + QEN71_RS06925 0.82 -0.4 1,539,200 + QEN71_RS06925 0.82 +0.7 1,539,200 + QEN71_RS06925 0.82 -0.4 1,539,200 + QEN71_RS06925 0.82 -0.2 1,539,200 + QEN71_RS06925 0.82 +1.3 1,539,201 - QEN71_RS06925 0.82 -0.4 1,539,201 - QEN71_RS06925 0.82 +0.9 1,539,201 - QEN71_RS06925 0.82 -0.1 1,539,201 - QEN71_RS06925 0.82 -0.3 1,539,201 - QEN71_RS06925 0.82 +2.1 1,539,201 - QEN71_RS06925 0.82 -0.3 1,539,201 - QEN71_RS06925 0.82 +0.4 1,539,201 - QEN71_RS06925 0.82 -1.4 1,539,201 - QEN71_RS06925 0.82 -0.3 1,539,204 + QEN71_RS06925 0.82 +0.5 1,539,204 + QEN71_RS06925 0.82 -0.3 1,539,283 + QEN71_RS06925 0.85 +0.2 1,539,283 + QEN71_RS06925 0.85 -2.6 1,539,283 + QEN71_RS06925 0.85 +0.7 1,539,356 + QEN71_RS06925 0.87 -1.1 1,539,374 + QEN71_RS06925 0.88 -1.0 1,539,374 + QEN71_RS06925 0.88 -0.8 1,539,374 + QEN71_RS06925 0.88 +1.2 1,539,374 + QEN71_RS06925 0.88 -1.3 1,539,375 - QEN71_RS06925 0.88 -0.0 1,539,375 - QEN71_RS06925 0.88 +0.5 1,539,570 + +0.6 1,539,570 + +0.7 1,539,571 - -0.4 1,539,571 - -2.3 1,539,571 - -1.3 1,539,624 + -0.1 1,539,624 + -1.1 1,539,624 + -1.1 1,539,624 + -0.9 1,539,624 + -0.5 1,539,625 - -0.1 1,539,625 - +1.0 1,539,625 - +0.0 1,539,625 - -0.8 1,539,717 + +0.1 1,539,717 + +1.4 1,539,717 + -0.7 1,539,717 + +0.5 1,539,718 - -0.2 1,539,718 - -1.5 1,539,718 - -0.9 1,539,720 + -0.7 1,539,720 + -1.6 1,539,720 + +0.6 1,539,720 + +0.5 1,539,720 + +0.6 1,539,721 - -0.2 1,539,721 - -0.1 1,539,721 - -0.9 1,539,721 - +0.4 1,540,031 + QEN71_RS06930 0.31 -0.3 1,540,031 + QEN71_RS06930 0.31 -0.4 1,540,032 - QEN71_RS06930 0.31 -0.9 1,540,032 - QEN71_RS06930 0.31 -0.2 1,540,032 - QEN71_RS06930 0.31 +0.8 1,540,032 - QEN71_RS06930 0.31 +0.3 1,540,032 - QEN71_RS06930 0.31 -0.5 1,540,032 - QEN71_RS06930 0.31 -0.4 1,540,032 - QEN71_RS06930 0.31 -0.8 1,540,213 - QEN71_RS06930 0.52 +0.0 1,540,252 + QEN71_RS06930 0.56 -0.6 1,540,252 + QEN71_RS06930 0.56 -1.1 1,540,252 + QEN71_RS06930 0.56 -0.4 1,540,252 + QEN71_RS06930 0.56 -0.6 1,540,252 + QEN71_RS06930 0.56 -0.2 1,540,253 - QEN71_RS06930 0.56 -0.7 1,540,288 + QEN71_RS06930 0.60 -1.1 1,540,289 - QEN71_RS06930 0.60 -0.6 1,540,412 + QEN71_RS06930 0.74 -0.1 1,540,412 + QEN71_RS06930 0.74 -1.1 1,540,413 - QEN71_RS06930 0.74 -0.0 1,540,413 - QEN71_RS06930 0.74 +0.6 1,540,467 + QEN71_RS06930 0.80 +0.2 1,540,467 + QEN71_RS06930 0.80 -0.2 1,540,467 + QEN71_RS06930 0.80 -0.0 1,540,467 + QEN71_RS06930 0.80 +0.2 1,540,468 - QEN71_RS06930 0.80 -0.2 1,540,538 + QEN71_RS06930 0.88 -0.2 1,540,608 - -0.4 1,540,619 + -0.1 1,540,619 + -0.0 1,540,620 - +0.3 1,540,620 - +0.7 1,540,723 + -0.7
Or see this region's nucleotide sequence