Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04940

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,076,389	+		QEN71_RS04935	0.61	-0.7
1,076,390	-		QEN71_RS04935	0.61	-0.4
1,076,494	+		QEN71_RS04935	0.67	+1.3
1,076,494	+		QEN71_RS04935	0.67	-0.1
1,076,495	-		QEN71_RS04935	0.67	+0.2
1,076,495	-		QEN71_RS04935	0.67	+0.4
1,076,495	-		QEN71_RS04935	0.67	+0.1
1,076,495	-		QEN71_RS04935	0.67	+0.9
1,076,524	+		QEN71_RS04935	0.69	-0.3
1,076,524	+		QEN71_RS04935	0.69	-0.3
1,076,524	+		QEN71_RS04935	0.69	+0.3
1,076,525	-		QEN71_RS04935	0.69	-0.4
1,076,608	+		QEN71_RS04935	0.74	-0.9
1,076,609	-		QEN71_RS04935	0.74	-0.1
1,076,620	+		QEN71_RS04935	0.75	-2.1
1,076,621	-		QEN71_RS04935	0.75	+2.1
1,076,621	-		QEN71_RS04935	0.75	-0.1
1,076,858	-				-0.0
1,076,858	-				-0.6
1,076,858	-				-1.6
1,076,887	+				-0.1
1,076,888	-				-1.2
1,076,953	+				+0.7
1,076,953	+				-0.4
1,076,953	+				+0.1
1,076,954	-				+0.1
1,076,954	-				+0.3
1,077,003	+				+0.6
1,077,003	+				+0.2
1,077,003	+				+0.1
1,077,003	+				-0.1
1,077,004	-				+0.7
1,077,004	-				+0.7
1,077,004	-				-0.4
1,077,016	+				+0.4
1,077,016	+				-0.2
1,077,017	-				-0.7
1,077,017	-				-0.4
1,077,017	-				+2.1
1,077,053	+				+1.0
1,077,053	+				-0.0
1,077,053	+				-0.4
1,077,053	+				-1.1
1,077,054	-				-1.9
1,077,054	-				-1.1
1,077,110	+				-0.4
1,077,118	+				-0.9
1,077,118	+				-1.4
1,077,118	+				-0.1
1,077,118	+				-0.9
1,077,119	-				-1.5
1,077,159	-				+0.1
1,077,159	-				+0.2
1,077,159	-				-0.5
1,077,159	-				+0.1
1,077,168	-				-0.1
1,077,188	-				-0.9
1,077,188	-				-0.6
1,077,218	+				+0.5
1,077,219	-				-0.2
1,077,228	+				-0.7
1,077,229	-				-0.3
1,077,369	+				-0.4
1,077,369	+				+0.4
1,077,370	-				+0.2
1,077,370	-				-0.3
1,077,370	-				+0.1
1,077,370	-				+0.6
1,077,370	-				+0.3
1,077,475	+		QEN71_RS04940	0.16	-0.3
1,077,475	+		QEN71_RS04940	0.16	-0.1
1,077,475	+		QEN71_RS04940	0.16	-0.9
1,077,475	+		QEN71_RS04940	0.16	-0.1
1,077,475	+		QEN71_RS04940	0.16	-1.1
1,077,475	+		QEN71_RS04940	0.16	+0.0
1,077,475	+		QEN71_RS04940	0.16	+0.5
1,077,475	+		QEN71_RS04940	0.16	+0.6
1,077,476	-		QEN71_RS04940	0.16	-0.4
1,077,476	-		QEN71_RS04940	0.16	-1.1
1,077,476	-		QEN71_RS04940	0.16	-0.5
1,077,476	-		QEN71_RS04940	0.16	-0.4
1,077,476	-		QEN71_RS04940	0.16	+0.2
1,077,476	-		QEN71_RS04940	0.16	-0.2
1,077,476	-		QEN71_RS04940	0.16	-0.6
1,077,476	-		QEN71_RS04940	0.16	-1.1
1,077,476	-		QEN71_RS04940	0.16	+0.1
1,077,508	-		QEN71_RS04940	0.18	+0.7
1,077,571	-		QEN71_RS04940	0.22	-0.2
1,077,670	+		QEN71_RS04940	0.30	+0.2
1,077,670	+		QEN71_RS04940	0.30	-0.1
1,077,670	+		QEN71_RS04940	0.30	+1.2
1,077,670	+		QEN71_RS04940	0.30	-2.4
1,077,670	+		QEN71_RS04940	0.30	+0.1
1,077,671	-		QEN71_RS04940	0.30	-0.2
1,077,671	-		QEN71_RS04940	0.30	+1.1
1,077,703	+		QEN71_RS04940	0.32	+0.6
1,077,703	+		QEN71_RS04940	0.32	-1.5
1,077,704	-		QEN71_RS04940	0.32	+1.6
1,077,704	-		QEN71_RS04940	0.32	-0.4
1,077,991	+		QEN71_RS04940	0.53	+0.3
1,077,991	+		QEN71_RS04940	0.53	+0.0
1,077,992	-		QEN71_RS04940	0.53	+0.5
1,077,998	-		QEN71_RS04940	0.54	+0.6
1,077,998	-		QEN71_RS04940	0.54	-0.0
1,078,009	+		QEN71_RS04940	0.54	+0.9
1,078,018	+		QEN71_RS04940	0.55	+0.2
1,078,019	-		QEN71_RS04940	0.55	+0.6
1,078,019	-		QEN71_RS04940	0.55	-0.0
1,078,019	-		QEN71_RS04940	0.55	+0.3
1,078,093	-		QEN71_RS04940	0.60	+0.9
1,078,093	-		QEN71_RS04940	0.60	-0.7
1,078,222	+		QEN71_RS04940	0.70	+0.1
1,078,223	-		QEN71_RS04940	0.70	-0.9
1,078,276	+		QEN71_RS04940	0.74	+0.0
1,078,276	+		QEN71_RS04940	0.74	-1.4
1,078,277	-		QEN71_RS04940	0.74	-1.2
1,078,348	+		QEN71_RS04940	0.79	+1.3
1,078,348	+		QEN71_RS04940	0.79	-0.1
1,078,348	+		QEN71_RS04940	0.79	-2.2
1,078,348	+		QEN71_RS04940	0.79	-1.2
1,078,349	-		QEN71_RS04940	0.79	-0.2
1,078,349	-		QEN71_RS04940	0.79	-0.1
1,078,349	-		QEN71_RS04940	0.79	-2.1
1,078,349	-		QEN71_RS04940	0.79	-0.4
1,078,349	-		QEN71_RS04940	0.79	+1.3
1,078,349	-		QEN71_RS04940	0.79	-0.9
1,078,378	+		QEN71_RS04940	0.81	+1.4
1,078,379	-		QEN71_RS04940	0.81	+0.1
1,078,379	-		QEN71_RS04940	0.81	-0.1
1,078,379	-		QEN71_RS04940	0.81	+1.2
1,078,379	-		QEN71_RS04940	0.81	-1.3
1,078,392	+		QEN71_RS04940	0.82	-0.1
1,078,411	+		QEN71_RS04940	0.84	+0.4
1,078,411	+		QEN71_RS04940	0.84	-0.1
1,078,412	-		QEN71_RS04940	0.84	+0.7
1,078,412	-		QEN71_RS04940	0.84	-0.3
1,078,462	+		QEN71_RS04940	0.87	-0.1
1,078,462	+		QEN71_RS04940	0.87	+0.9
1,078,463	-		QEN71_RS04940	0.87	-0.3
1,078,463	-		QEN71_RS04940	0.87	+0.9
1,078,479	+		QEN71_RS04940	0.89	-0.2
1,078,633	+				-0.5
1,078,633	+				-1.3
1,078,634	-				+0.9
1,078,634	-				+1.3
1,078,730	+		QEN71_RS04945	0.40	-1.1
1,078,739	+		QEN71_RS04945	0.43	+0.7
1,078,740	-		QEN71_RS04945	0.44	-1.5
1,078,864	+		QEN71_RS04945	0.87	-0.1
1,078,864	+		QEN71_RS04945	0.87	-0.1
1,078,865	-		QEN71_RS04945	0.87	+0.6
1,078,865	-		QEN71_RS04945	0.87	+1.2
1,078,876	-				+0.0
1,078,876	-				-0.6
1,078,877	+				-0.1
1,078,877	+				-0.1
1,078,877	+				-0.1
1,078,877	+				+0.0
1,078,877	+				-2.5
1,078,877	+				-0.6
1,078,878	-				-0.2
1,078,878	-				-2.1
1,078,878	-				+0.6
1,078,878	-				-0.9
1,078,878	-				+0.2
1,078,878	-				+0.1
1,078,904	+				-0.2
1,078,928	-				-0.7
1,078,942	-				-2.0
1,078,989	+				+0.2
1,078,989	+				+0.4
1,078,989	+				+0.3
1,078,990	-				-0.6
1,078,990	-				+0.1
1,078,990	-				-0.8
1,079,072	+				+0.4
1,079,073	-				-0.5
1,079,073	-				-0.9
1,079,101	+				+1.2
1,079,101	+				+0.5
1,079,101	+				-0.1
1,079,101	+				+1.9
1,079,101	+				+0.4
1,079,101	+				-0.5
1,079,101	+				-0.1
1,079,102	-				-1.0
1,079,146	+				+0.3
1,079,146	+				-1.2
1,079,146	+				-1.0
1,079,146	+				-1.6
1,079,146	+				+0.6
1,079,146	+				-0.2
1,079,146	+				+0.0
1,079,146	+				+1.2
1,079,146	+				+0.9
1,079,146	+				-0.4
1,079,146	+				+0.1
1,079,146	+				-0.8
1,079,146	+				+0.6
1,079,146	+				+0.7
1,079,146	+				-0.1
1,079,147	-				-1.1
1,079,147	-				-0.6
1,079,147	-				-0.2
1,079,147	-				-0.6
1,079,147	-				-0.6
1,079,147	-				-2.1
1,079,263	+		QEN71_RS04950	0.29	-0.5
1,079,263	+		QEN71_RS04950	0.29	+0.1
1,079,264	-		QEN71_RS04950	0.29	-0.9
1,079,264	-		QEN71_RS04950	0.29	+0.1
1,079,264	-		QEN71_RS04950	0.29	+0.1
1,079,264	-		QEN71_RS04950	0.29	-1.3