Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03860

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03855 and QEN71_RS03860 are separated by 31 nucleotidesQEN71_RS03860 and QEN71_RS03865 overlap by 4 nucleotidesQEN71_RS03865 and QEN71_RS03870 overlap by 1 nucleotides QEN71_RS03855: QEN71_RS03855 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 851,658 to 852,839 _RS03855 QEN71_RS03860: QEN71_RS03860 - hotdog family protein, at 852,871 to 853,365 _RS03860 QEN71_RS03865: QEN71_RS03865 - 3-ketoacyl-ACP reductase FabG2, at 853,362 to 854,087 _RS03865 QEN71_RS03870: QEN71_RS03870 - beta-ketoacyl-ACP synthase, at 854,087 to 855,313 _RS03870 Position (kb) 852 853 854Strain fitness (log2 ratio) -2 -1 0 1 2at 852.045 kb on + strand, within QEN71_RS03855at 852.045 kb on + strand, within QEN71_RS03855at 852.046 kb on - strand, within QEN71_RS03855at 852.046 kb on - strand, within QEN71_RS03855at 852.046 kb on - strand, within QEN71_RS03855at 852.172 kb on + strand, within QEN71_RS03855at 852.173 kb on - strand, within QEN71_RS03855at 852.218 kb on + strand, within QEN71_RS03855at 852.495 kb on + strand, within QEN71_RS03855at 852.496 kb on - strand, within QEN71_RS03855at 852.496 kb on - strand, within QEN71_RS03855at 852.777 kb on + strandat 852.778 kb on - strandat 852.827 kb on - strandat 852.827 kb on - strandat 852.827 kb on - strandat 852.864 kb on + strandat 852.864 kb on + strandat 852.864 kb on + strandat 852.921 kb on + strand, within QEN71_RS03860at 852.922 kb on - strand, within QEN71_RS03860at 853.030 kb on + strand, within QEN71_RS03860at 853.030 kb on + strand, within QEN71_RS03860at 853.030 kb on + strand, within QEN71_RS03860at 853.168 kb on + strand, within QEN71_RS03860at 853.168 kb on + strand, within QEN71_RS03860at 853.169 kb on - strand, within QEN71_RS03860at 853.169 kb on - strand, within QEN71_RS03860at 853.169 kb on - strand, within QEN71_RS03860at 853.169 kb on - strand, within QEN71_RS03860at 853.259 kb on - strand, within QEN71_RS03860at 853.354 kb on - strandat 853.354 kb on - strandat 853.354 kb on - strandat 853.420 kb on - strandat 853.602 kb on + strand, within QEN71_RS03865at 853.602 kb on + strand, within QEN71_RS03865at 853.602 kb on + strand, within QEN71_RS03865at 853.605 kb on + strand, within QEN71_RS03865at 853.605 kb on + strand, within QEN71_RS03865at 853.606 kb on - strand, within QEN71_RS03865at 853.707 kb on + strand, within QEN71_RS03865at 853.707 kb on + strand, within QEN71_RS03865at 853.707 kb on + strand, within QEN71_RS03865at 853.707 kb on + strand, within QEN71_RS03865at 853.708 kb on - strand, within QEN71_RS03865at 853.708 kb on - strand, within QEN71_RS03865at 853.818 kb on + strand, within QEN71_RS03865at 853.819 kb on - strand, within QEN71_RS03865at 853.819 kb on - strand, within QEN71_RS03865at 853.819 kb on - strand, within QEN71_RS03865at 853.819 kb on - strand, within QEN71_RS03865at 853.940 kb on + strand, within QEN71_RS03865at 853.940 kb on + strand, within QEN71_RS03865at 853.940 kb on + strand, within QEN71_RS03865at 853.940 kb on + strand, within QEN71_RS03865at 854.043 kb on + strandat 854.044 kb on - strandat 854.044 kb on - strandat 854.044 kb on - strandat 854.044 kb on - strandat 854.208 kb on - strandat 854.312 kb on + strand, within QEN71_RS03870at 854.312 kb on + strand, within QEN71_RS03870at 854.312 kb on + strand, within QEN71_RS03870at 854.312 kb on + strand, within QEN71_RS03870at 854.312 kb on + strand, within QEN71_RS03870at 854.312 kb on + strand, within QEN71_RS03870at 854.312 kb on + strand, within QEN71_RS03870at 854.312 kb on + strand, within QEN71_RS03870at 854.313 kb on - strand, within QEN71_RS03870at 854.313 kb on - strand, within QEN71_RS03870at 854.313 kb on - strand, within QEN71_RS03870at 854.313 kb on - strand, within QEN71_RS03870at 854.313 kb on - strand, within QEN71_RS03870at 854.313 kb on - strand, within QEN71_RS03870

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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852,045 + QEN71_RS03855 0.33 -1.0
852,045 + QEN71_RS03855 0.33 -0.4
852,046 - QEN71_RS03855 0.33 +0.7
852,046 - QEN71_RS03855 0.33 -0.1
852,046 - QEN71_RS03855 0.33 -0.5
852,172 + QEN71_RS03855 0.43 +0.6
852,173 - QEN71_RS03855 0.44 +0.5
852,218 + QEN71_RS03855 0.47 +0.8
852,495 + QEN71_RS03855 0.71 -0.0
852,496 - QEN71_RS03855 0.71 -0.0
852,496 - QEN71_RS03855 0.71 -0.2
852,777 + +0.9
852,778 - +0.0
852,827 - +0.3
852,827 - +0.5
852,827 - +0.6
852,864 + +0.3
852,864 + -1.0
852,864 + +0.5
852,921 + QEN71_RS03860 0.10 -0.7
852,922 - QEN71_RS03860 0.10 -0.0
853,030 + QEN71_RS03860 0.32 +0.2
853,030 + QEN71_RS03860 0.32 -0.8
853,030 + QEN71_RS03860 0.32 -0.4
853,168 + QEN71_RS03860 0.60 +0.4
853,168 + QEN71_RS03860 0.60 -0.6
853,169 - QEN71_RS03860 0.60 -0.6
853,169 - QEN71_RS03860 0.60 -0.2
853,169 - QEN71_RS03860 0.60 -0.8
853,169 - QEN71_RS03860 0.60 -0.4
853,259 - QEN71_RS03860 0.78 +1.1
853,354 - -1.1
853,354 - +0.8
853,354 - +0.5
853,420 - -0.1
853,602 + QEN71_RS03865 0.33 +0.8
853,602 + QEN71_RS03865 0.33 -0.4
853,602 + QEN71_RS03865 0.33 +0.1
853,605 + QEN71_RS03865 0.33 -1.1
853,605 + QEN71_RS03865 0.33 +1.2
853,606 - QEN71_RS03865 0.34 -0.0
853,707 + QEN71_RS03865 0.48 +0.6
853,707 + QEN71_RS03865 0.48 -1.3
853,707 + QEN71_RS03865 0.48 -0.1
853,707 + QEN71_RS03865 0.48 -0.7
853,708 - QEN71_RS03865 0.48 -0.5
853,708 - QEN71_RS03865 0.48 -0.4
853,818 + QEN71_RS03865 0.63 -0.0
853,819 - QEN71_RS03865 0.63 +1.1
853,819 - QEN71_RS03865 0.63 -1.8
853,819 - QEN71_RS03865 0.63 +0.0
853,819 - QEN71_RS03865 0.63 -0.6
853,940 + QEN71_RS03865 0.80 -0.3
853,940 + QEN71_RS03865 0.80 +0.0
853,940 + QEN71_RS03865 0.80 +1.3
853,940 + QEN71_RS03865 0.80 +0.1
854,043 + +0.6
854,044 - -0.5
854,044 - -0.1
854,044 - +0.1
854,044 - -1.1
854,208 - -0.5
854,312 + QEN71_RS03870 0.18 -0.7
854,312 + QEN71_RS03870 0.18 -0.5
854,312 + QEN71_RS03870 0.18 +2.2
854,312 + QEN71_RS03870 0.18 +0.5
854,312 + QEN71_RS03870 0.18 -0.4
854,312 + QEN71_RS03870 0.18 -1.5
854,312 + QEN71_RS03870 0.18 -0.2
854,312 + QEN71_RS03870 0.18 +0.1
854,313 - QEN71_RS03870 0.18 -0.9
854,313 - QEN71_RS03870 0.18 -0.3
854,313 - QEN71_RS03870 0.18 +0.4
854,313 - QEN71_RS03870 0.18 -0.5
854,313 - QEN71_RS03870 0.18 +0.3
854,313 - QEN71_RS03870 0.18 +1.4

Or see this region's nucleotide sequence