Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04217 and MIT1002_04218 overlap by 40 nucleotides MIT1002_04218 and MIT1002_04219 overlap by 14 nucleotides MIT1002_04219 and MIT1002_04220 are separated by 9 nucleotides
MIT1002_04217: MIT1002_04217 - Chemotaxis protein methyltransferase, at 85,450 to 86,547
_04217
MIT1002_04218: MIT1002_04218 - hypothetical protein, at 86,508 to 86,780
_04218
MIT1002_04219: MIT1002_04219 - CheW-like domain protein, at 86,767 to 87,306
_04219
MIT1002_04220: MIT1002_04220 - Ribose and galactose chemoreceptor protein, at 87,316 to 88,779
_04220
Position (kb) 86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 85.604 kb on + strand, within MIT1002_04217 at 85.611 kb on + strand, within MIT1002_04217 at 85.621 kb on + strand, within MIT1002_04217 at 85.640 kb on + strand, within MIT1002_04217 at 85.642 kb on + strand, within MIT1002_04217 at 85.719 kb on + strand, within MIT1002_04217 at 85.727 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.779 kb on + strand, within MIT1002_04217 at 85.784 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.787 kb on + strand, within MIT1002_04217 at 85.823 kb on - strand, within MIT1002_04217 at 85.823 kb on - strand, within MIT1002_04217 at 85.831 kb on - strand, within MIT1002_04217 at 85.832 kb on + strand, within MIT1002_04217 at 85.840 kb on - strand, within MIT1002_04217 at 85.920 kb on + strand, within MIT1002_04217 at 85.921 kb on - strand, within MIT1002_04217 at 85.950 kb on + strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.972 kb on - strand, within MIT1002_04217 at 86.008 kb on - strand, within MIT1002_04217 at 86.008 kb on - strand, within MIT1002_04217 at 86.119 kb on - strand, within MIT1002_04217 at 86.144 kb on - strand, within MIT1002_04217 at 86.153 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.161 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.169 kb on + strand, within MIT1002_04217 at 86.185 kb on + strand, within MIT1002_04217 at 86.249 kb on + strand, within MIT1002_04217 at 86.297 kb on + strand, within MIT1002_04217 at 86.297 kb on + strand, within MIT1002_04217 at 86.305 kb on - strand, within MIT1002_04217 at 86.320 kb on + strand, within MIT1002_04217 at 86.320 kb on + strand, within MIT1002_04217 at 86.328 kb on - strand, within MIT1002_04217 at 86.328 kb on - strand, within MIT1002_04217 at 86.388 kb on + strand, within MIT1002_04217 at 86.413 kb on + strand, within MIT1002_04217 at 86.414 kb on + strand, within MIT1002_04217 at 86.428 kb on - strand, within MIT1002_04217 at 86.428 kb on - strand, within MIT1002_04217 at 86.473 kb on + strand at 86.497 kb on + strand at 86.497 kb on + strand at 86.497 kb on + strand at 86.498 kb on + strand at 86.506 kb on - strand at 86.506 kb on - strand at 86.514 kb on + strand at 86.518 kb on - strand at 86.522 kb on - strand at 86.553 kb on + strand, within MIT1002_04218 at 86.553 kb on + strand, within MIT1002_04218 at 86.561 kb on + strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.580 kb on + strand, within MIT1002_04218 at 86.580 kb on + strand, within MIT1002_04218 at 86.588 kb on - strand, within MIT1002_04218 at 86.601 kb on + strand, within MIT1002_04218 at 86.603 kb on + strand, within MIT1002_04218 at 86.724 kb on - strand, within MIT1002_04218 at 86.781 kb on + strand at 86.781 kb on + strand at 86.781 kb on + strand at 86.786 kb on + strand at 86.789 kb on - strand at 86.791 kb on + strand at 86.794 kb on - strand at 86.838 kb on + strand, within MIT1002_04219 at 86.846 kb on - strand, within MIT1002_04219 at 86.857 kb on - strand, within MIT1002_04219 at 86.873 kb on + strand, within MIT1002_04219 at 86.894 kb on + strand, within MIT1002_04219 at 86.931 kb on - strand, within MIT1002_04219 at 87.061 kb on - strand, within MIT1002_04219 at 87.076 kb on + strand, within MIT1002_04219 at 87.076 kb on + strand, within MIT1002_04219 at 87.077 kb on + strand, within MIT1002_04219 at 87.143 kb on - strand, within MIT1002_04219 at 87.153 kb on - strand, within MIT1002_04219 at 87.159 kb on - strand, within MIT1002_04219 at 87.161 kb on - strand, within MIT1002_04219 at 87.177 kb on + strand, within MIT1002_04219 at 87.185 kb on - strand, within MIT1002_04219 at 87.211 kb on + strand, within MIT1002_04219 at 87.211 kb on + strand, within MIT1002_04219 at 87.220 kb on - strand, within MIT1002_04219 at 87.297 kb on + strand at 87.297 kb on + strand at 87.301 kb on + strand at 87.314 kb on - strand at 87.315 kb on - strand at 87.423 kb on + strand at 87.430 kb on + strand at 87.456 kb on - strand at 87.461 kb on + strand at 87.461 kb on + strand at 87.468 kb on + strand, within MIT1002_04220 at 87.483 kb on + strand, within MIT1002_04220 at 87.483 kb on - strand, within MIT1002_04220 at 87.488 kb on + strand, within MIT1002_04220 at 87.510 kb on - strand, within MIT1002_04220 at 87.544 kb on + strand, within MIT1002_04220 at 87.544 kb on + strand, within MIT1002_04220 at 87.557 kb on - strand, within MIT1002_04220 at 87.624 kb on - strand, within MIT1002_04220 at 87.652 kb on - strand, within MIT1002_04220 at 87.654 kb on - strand, within MIT1002_04220 at 87.773 kb on + strand, within MIT1002_04220
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 85,604 + MIT1002_04217 0.14 -0.0 85,611 + MIT1002_04217 0.15 -1.0 85,621 + MIT1002_04217 0.16 -1.7 85,640 + MIT1002_04217 0.17 -0.2 85,642 + MIT1002_04217 0.17 -0.7 85,719 + MIT1002_04217 0.24 +0.7 85,727 + MIT1002_04217 0.25 -0.5 85,777 + MIT1002_04217 0.30 +0.1 85,777 + MIT1002_04217 0.30 -0.1 85,777 + MIT1002_04217 0.30 +1.1 85,777 + MIT1002_04217 0.30 +0.8 85,777 + MIT1002_04217 0.30 +0.1 85,777 + MIT1002_04217 0.30 -0.7 85,779 + MIT1002_04217 0.30 -0.2 85,784 - MIT1002_04217 0.30 -0.3 85,785 - MIT1002_04217 0.31 +0.6 85,785 - MIT1002_04217 0.31 -0.8 85,785 - MIT1002_04217 0.31 +0.1 85,785 - MIT1002_04217 0.31 +0.4 85,785 - MIT1002_04217 0.31 +0.8 85,785 - MIT1002_04217 0.31 -0.6 85,787 + MIT1002_04217 0.31 -0.1 85,823 - MIT1002_04217 0.34 -0.9 85,823 - MIT1002_04217 0.34 +1.1 85,831 - MIT1002_04217 0.35 -0.0 85,832 + MIT1002_04217 0.35 +0.2 85,840 - MIT1002_04217 0.36 +0.6 85,920 + MIT1002_04217 0.43 +2.2 85,921 - MIT1002_04217 0.43 -0.6 85,950 + MIT1002_04217 0.46 +1.4 85,969 - MIT1002_04217 0.47 +2.9 85,969 - MIT1002_04217 0.47 +1.1 85,969 - MIT1002_04217 0.47 +0.6 85,969 - MIT1002_04217 0.47 -0.4 85,972 - MIT1002_04217 0.48 -0.1 86,008 - MIT1002_04217 0.51 -1.9 86,008 - MIT1002_04217 0.51 -0.1 86,119 - MIT1002_04217 0.61 -0.0 86,144 - MIT1002_04217 0.63 +0.6 86,153 + MIT1002_04217 0.64 -0.2 86,154 + MIT1002_04217 0.64 +0.6 86,154 + MIT1002_04217 0.64 +0.4 86,154 + MIT1002_04217 0.64 -2.0 86,154 + MIT1002_04217 0.64 -1.6 86,161 - MIT1002_04217 0.65 +0.3 86,162 - MIT1002_04217 0.65 +1.1 86,162 - MIT1002_04217 0.65 +0.5 86,162 - MIT1002_04217 0.65 -1.6 86,162 - MIT1002_04217 0.65 +0.4 86,162 - MIT1002_04217 0.65 +0.7 86,169 + MIT1002_04217 0.65 +0.0 86,185 + MIT1002_04217 0.67 -0.0 86,249 + MIT1002_04217 0.73 +0.4 86,297 + MIT1002_04217 0.77 +0.3 86,297 + MIT1002_04217 0.77 -0.9 86,305 - MIT1002_04217 0.78 +1.0 86,320 + MIT1002_04217 0.79 +0.7 86,320 + MIT1002_04217 0.79 -0.2 86,328 - MIT1002_04217 0.80 -0.1 86,328 - MIT1002_04217 0.80 -0.5 86,388 + MIT1002_04217 0.85 +0.2 86,413 + MIT1002_04217 0.88 +0.8 86,414 + MIT1002_04217 0.88 +1.3 86,428 - MIT1002_04217 0.89 -1.4 86,428 - MIT1002_04217 0.89 +0.5 86,473 + -0.1 86,497 + -0.1 86,497 + +0.2 86,497 + +0.2 86,498 + +0.2 86,506 - +1.2 86,506 - +0.2 86,514 + +0.4 86,518 - -1.1 86,522 - +0.1 86,553 + MIT1002_04218 0.16 -2.1 86,553 + MIT1002_04218 0.16 -0.6 86,561 + MIT1002_04218 0.19 +2.6 86,561 - MIT1002_04218 0.19 +0.4 86,561 - MIT1002_04218 0.19 +0.1 86,561 - MIT1002_04218 0.19 -2.3 86,561 - MIT1002_04218 0.19 +0.5 86,561 - MIT1002_04218 0.19 +1.1 86,569 - MIT1002_04218 0.22 +0.2 86,569 - MIT1002_04218 0.22 +1.8 86,569 - MIT1002_04218 0.22 -1.1 86,569 - MIT1002_04218 0.22 -0.9 86,580 + MIT1002_04218 0.26 +1.2 86,580 + MIT1002_04218 0.26 -0.4 86,588 - MIT1002_04218 0.29 -1.2 86,601 + MIT1002_04218 0.34 +0.0 86,603 + MIT1002_04218 0.35 -0.5 86,724 - MIT1002_04218 0.79 -0.3 86,781 + -0.4 86,781 + -0.0 86,781 + -0.1 86,786 + +1.3 86,789 - +0.7 86,791 + -0.3 86,794 - -0.3 86,838 + MIT1002_04219 0.13 +0.1 86,846 - MIT1002_04219 0.15 -3.1 86,857 - MIT1002_04219 0.17 +0.9 86,873 + MIT1002_04219 0.20 +0.0 86,894 + MIT1002_04219 0.24 -0.2 86,931 - MIT1002_04219 0.30 -0.2 87,061 - MIT1002_04219 0.54 -1.0 87,076 + MIT1002_04219 0.57 +1.2 87,076 + MIT1002_04219 0.57 +0.8 87,077 + MIT1002_04219 0.57 -0.5 87,143 - MIT1002_04219 0.70 +0.5 87,153 - MIT1002_04219 0.71 +0.3 87,159 - MIT1002_04219 0.73 +1.4 87,161 - MIT1002_04219 0.73 +0.3 87,177 + MIT1002_04219 0.76 +0.4 87,185 - MIT1002_04219 0.77 +0.2 87,211 + MIT1002_04219 0.82 +0.0 87,211 + MIT1002_04219 0.82 +0.9 87,220 - MIT1002_04219 0.84 -3.4 87,297 + +0.4 87,297 + +1.0 87,301 + -0.8 87,314 - +0.7 87,315 - +0.2 87,423 + -1.0 87,430 + -1.0 87,456 - -1.6 87,461 + -0.8 87,461 + -1.4 87,468 + MIT1002_04220 0.10 -0.4 87,483 + MIT1002_04220 0.11 -1.1 87,483 - MIT1002_04220 0.11 -0.5 87,488 + MIT1002_04220 0.12 -1.4 87,510 - MIT1002_04220 0.13 -0.3 87,544 + MIT1002_04220 0.16 +0.1 87,544 + MIT1002_04220 0.16 +0.8 87,557 - MIT1002_04220 0.16 -0.8 87,624 - MIT1002_04220 0.21 -0.2 87,652 - MIT1002_04220 0.23 +1.6 87,654 - MIT1002_04220 0.23 +0.3 87,773 + MIT1002_04220 0.31 +0.3
Or see this region's nucleotide sequence