Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04163 and MIT1002_04164 are separated by 675 nucleotides MIT1002_04164 and MIT1002_04165 overlap by 4 nucleotides MIT1002_04165 and MIT1002_04166 are separated by 39 nucleotides
MIT1002_04163: MIT1002_04163 - hypothetical protein, at 28,943 to 29,203
_04163
MIT1002_04164: MIT1002_04164 - hypothetical protein, at 29,879 to 30,001
_04164
MIT1002_04165: MIT1002_04165 - hypothetical protein, at 29,998 to 30,129
_04165
MIT1002_04166: MIT1002_04166 - Serine/threonine-protein kinase HipA, at 30,169 to 31,452
_04166
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.889 kb on + strand at 28.889 kb on - strand at 28.949 kb on - strand at 28.960 kb on + strand at 29.011 kb on - strand, within MIT1002_04163 at 29.096 kb on + strand, within MIT1002_04163 at 29.124 kb on + strand, within MIT1002_04163 at 29.124 kb on + strand, within MIT1002_04163 at 29.124 kb on + strand, within MIT1002_04163 at 29.132 kb on - strand, within MIT1002_04163 at 29.141 kb on + strand, within MIT1002_04163 at 29.271 kb on + strand at 29.327 kb on + strand at 29.582 kb on + strand at 29.590 kb on - strand at 29.595 kb on + strand at 29.603 kb on - strand at 29.603 kb on - strand at 29.782 kb on + strand at 29.790 kb on + strand at 29.790 kb on - strand at 29.799 kb on - strand at 29.876 kb on - strand at 29.899 kb on - strand, within MIT1002_04164 at 29.929 kb on + strand, within MIT1002_04164 at 29.954 kb on + strand, within MIT1002_04164 at 29.962 kb on - strand, within MIT1002_04164 at 30.074 kb on - strand, within MIT1002_04165 at 30.074 kb on - strand, within MIT1002_04165 at 30.097 kb on - strand, within MIT1002_04165 at 30.097 kb on - strand, within MIT1002_04165 at 30.117 kb on + strand at 30.132 kb on - strand at 30.144 kb on + strand at 30.251 kb on + strand at 30.256 kb on + strand at 30.287 kb on + strand at 30.293 kb on + strand at 30.293 kb on + strand at 30.368 kb on + strand, within MIT1002_04166 at 30.495 kb on + strand, within MIT1002_04166 at 30.501 kb on + strand, within MIT1002_04166 at 30.569 kb on - strand, within MIT1002_04166 at 30.571 kb on + strand, within MIT1002_04166 at 30.671 kb on + strand, within MIT1002_04166 at 30.679 kb on - strand, within MIT1002_04166 at 30.696 kb on - strand, within MIT1002_04166 at 30.722 kb on - strand, within MIT1002_04166 at 30.748 kb on - strand, within MIT1002_04166 at 30.857 kb on + strand, within MIT1002_04166 at 30.925 kb on + strand, within MIT1002_04166 at 30.979 kb on - strand, within MIT1002_04166 at 30.993 kb on + strand, within MIT1002_04166
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 28,889 + -1.0 28,889 - +0.4 28,949 - -0.2 28,960 + +0.5 29,011 - MIT1002_04163 0.26 +0.5 29,096 + MIT1002_04163 0.59 +0.2 29,124 + MIT1002_04163 0.69 +0.4 29,124 + MIT1002_04163 0.69 +1.0 29,124 + MIT1002_04163 0.69 -0.1 29,132 - MIT1002_04163 0.72 +1.0 29,141 + MIT1002_04163 0.76 -0.3 29,271 + -0.2 29,327 + -0.1 29,582 + -0.2 29,590 - -1.9 29,595 + -1.3 29,603 - +0.8 29,603 - +1.8 29,782 + +1.2 29,790 + +1.7 29,790 - -0.2 29,799 - -0.4 29,876 - +1.9 29,899 - MIT1002_04164 0.16 -0.9 29,929 + MIT1002_04164 0.41 +0.3 29,954 + MIT1002_04164 0.61 -1.9 29,962 - MIT1002_04164 0.67 +1.1 30,074 - MIT1002_04165 0.58 +1.3 30,074 - MIT1002_04165 0.58 +0.6 30,097 - MIT1002_04165 0.75 +0.4 30,097 - MIT1002_04165 0.75 -0.2 30,117 + -1.1 30,132 - +0.4 30,144 + +0.6 30,251 + +1.0 30,256 + -0.2 30,287 + +0.2 30,293 + +0.6 30,293 + +0.1 30,368 + MIT1002_04166 0.15 -2.7 30,495 + MIT1002_04166 0.25 -0.1 30,501 + MIT1002_04166 0.26 +0.3 30,569 - MIT1002_04166 0.31 -0.3 30,571 + MIT1002_04166 0.31 -0.7 30,671 + MIT1002_04166 0.39 +1.3 30,679 - MIT1002_04166 0.40 -0.5 30,696 - MIT1002_04166 0.41 -0.3 30,722 - MIT1002_04166 0.43 -0.0 30,748 - MIT1002_04166 0.45 +0.8 30,857 + MIT1002_04166 0.54 -0.1 30,925 + MIT1002_04166 0.59 +1.2 30,979 - MIT1002_04166 0.63 +0.6 30,993 + MIT1002_04166 0.64 +0.3
Or see this region's nucleotide sequence