Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04156 and MIT1002_04157 are separated by 366 nucleotides MIT1002_04157 and MIT1002_04158 overlap by 11 nucleotides
MIT1002_04156: MIT1002_04156 - hopanoid-associated sugar epimerase, at 22,528 to 25,002
_04156
MIT1002_04157: MIT1002_04157 - hypothetical protein, at 25,369 to 25,809
_04157
MIT1002_04158: MIT1002_04158 - putative secretion ATPase, PEP-CTERM locus subfamily, at 25,799 to 26,770
_04158
Position (kb) 25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.409 kb on + strand, within MIT1002_04156 at 24.434 kb on + strand, within MIT1002_04156 at 24.442 kb on - strand, within MIT1002_04156 at 24.442 kb on - strand, within MIT1002_04156 at 24.455 kb on + strand, within MIT1002_04156 at 24.509 kb on - strand, within MIT1002_04156 at 24.584 kb on - strand, within MIT1002_04156 at 24.620 kb on - strand, within MIT1002_04156 at 24.634 kb on - strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.667 kb on - strand, within MIT1002_04156 at 24.667 kb on - strand, within MIT1002_04156 at 24.768 kb on + strand at 24.783 kb on - strand at 24.783 kb on - strand at 24.788 kb on - strand at 24.788 kb on - strand at 24.889 kb on + strand at 24.902 kb on - strand at 24.912 kb on - strand at 25.041 kb on - strand at 25.079 kb on - strand at 25.090 kb on - strand at 25.123 kb on - strand at 25.161 kb on + strand at 25.179 kb on - strand at 25.247 kb on + strand at 25.288 kb on + strand at 25.312 kb on - strand at 25.316 kb on - strand at 25.327 kb on + strand at 25.354 kb on - strand at 25.575 kb on + strand, within MIT1002_04157 at 25.577 kb on - strand, within MIT1002_04157 at 25.601 kb on + strand, within MIT1002_04157 at 25.601 kb on + strand, within MIT1002_04157 at 25.609 kb on - strand, within MIT1002_04157 at 25.706 kb on - strand, within MIT1002_04157 at 25.874 kb on + strand at 25.874 kb on + strand at 25.882 kb on - strand at 25.882 kb on - strand at 25.882 kb on - strand at 25.903 kb on + strand, within MIT1002_04158 at 25.941 kb on - strand, within MIT1002_04158 at 25.941 kb on - strand, within MIT1002_04158 at 25.985 kb on + strand, within MIT1002_04158 at 25.993 kb on - strand, within MIT1002_04158 at 26.072 kb on - strand, within MIT1002_04158 at 26.077 kb on - strand, within MIT1002_04158 at 26.093 kb on + strand, within MIT1002_04158 at 26.201 kb on + strand, within MIT1002_04158 at 26.202 kb on + strand, within MIT1002_04158 at 26.227 kb on - strand, within MIT1002_04158 at 26.227 kb on - strand, within MIT1002_04158 at 26.336 kb on + strand, within MIT1002_04158 at 26.349 kb on + strand, within MIT1002_04158 at 26.370 kb on - strand, within MIT1002_04158 at 26.405 kb on + strand, within MIT1002_04158 at 26.450 kb on + strand, within MIT1002_04158 at 26.463 kb on - strand, within MIT1002_04158 at 26.488 kb on - strand, within MIT1002_04158 at 26.498 kb on - strand, within MIT1002_04158 at 26.505 kb on - strand, within MIT1002_04158 at 26.698 kb on + strand at 26.706 kb on + strand at 26.714 kb on - strand at 26.714 kb on - strand at 26.714 kb on - strand at 26.714 kb on - strand at 26.756 kb on + strand at 26.756 kb on + strand at 26.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 24,409 + MIT1002_04156 0.76 +0.2 24,434 + MIT1002_04156 0.77 +0.1 24,442 - MIT1002_04156 0.77 -0.1 24,442 - MIT1002_04156 0.77 -0.5 24,455 + MIT1002_04156 0.78 +1.8 24,509 - MIT1002_04156 0.80 +0.1 24,584 - MIT1002_04156 0.83 +0.1 24,620 - MIT1002_04156 0.85 +1.1 24,634 - MIT1002_04156 0.85 +0.1 24,659 + MIT1002_04156 0.86 -0.6 24,659 + MIT1002_04156 0.86 -0.0 24,659 + MIT1002_04156 0.86 +1.1 24,659 + MIT1002_04156 0.86 -0.0 24,667 - MIT1002_04156 0.86 -0.7 24,667 - MIT1002_04156 0.86 -0.3 24,768 + +0.7 24,783 - -0.6 24,783 - -0.4 24,788 - -1.6 24,788 - +0.1 24,889 + +1.4 24,902 - -0.6 24,912 - -1.0 25,041 - +0.3 25,079 - -0.8 25,090 - -0.3 25,123 - -0.7 25,161 + +0.1 25,179 - -1.1 25,247 + -0.3 25,288 + +0.8 25,312 - -0.3 25,316 - -0.2 25,327 + +0.0 25,354 - +0.3 25,575 + MIT1002_04157 0.47 +1.8 25,577 - MIT1002_04157 0.47 -0.7 25,601 + MIT1002_04157 0.53 +0.2 25,601 + MIT1002_04157 0.53 -3.4 25,609 - MIT1002_04157 0.54 +0.4 25,706 - MIT1002_04157 0.76 +1.4 25,874 + +0.1 25,874 + +0.1 25,882 - +1.0 25,882 - -0.9 25,882 - +0.2 25,903 + MIT1002_04158 0.11 +0.1 25,941 - MIT1002_04158 0.15 +0.4 25,941 - MIT1002_04158 0.15 +0.3 25,985 + MIT1002_04158 0.19 +0.2 25,993 - MIT1002_04158 0.20 +0.4 26,072 - MIT1002_04158 0.28 -0.6 26,077 - MIT1002_04158 0.29 +1.7 26,093 + MIT1002_04158 0.30 -0.7 26,201 + MIT1002_04158 0.41 +0.1 26,202 + MIT1002_04158 0.41 +1.5 26,227 - MIT1002_04158 0.44 +0.1 26,227 - MIT1002_04158 0.44 +0.1 26,336 + MIT1002_04158 0.55 -1.9 26,349 + MIT1002_04158 0.57 +0.1 26,370 - MIT1002_04158 0.59 -1.4 26,405 + MIT1002_04158 0.62 +0.6 26,450 + MIT1002_04158 0.67 -1.4 26,463 - MIT1002_04158 0.68 +0.7 26,488 - MIT1002_04158 0.71 +0.0 26,498 - MIT1002_04158 0.72 +0.6 26,505 - MIT1002_04158 0.73 +0.8 26,698 + -1.2 26,706 + +1.0 26,714 - -0.1 26,714 - -0.5 26,714 - +0.4 26,714 - +0.2 26,756 + +1.2 26,756 + -0.0 26,785 + +0.3
Or see this region's nucleotide sequence