Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04155 and MIT1002_04156 are separated by 333 nucleotides MIT1002_04156 and MIT1002_04157 are separated by 366 nucleotides MIT1002_04157 and MIT1002_04158 overlap by 11 nucleotides
MIT1002_04155: MIT1002_04155 - Rhodocoxin reductase, at 20,515 to 22,194
_04155
MIT1002_04156: MIT1002_04156 - hopanoid-associated sugar epimerase, at 22,528 to 25,002
_04156
MIT1002_04157: MIT1002_04157 - hypothetical protein, at 25,369 to 25,809
_04157
MIT1002_04158: MIT1002_04158 - putative secretion ATPase, PEP-CTERM locus subfamily, at 25,799 to 26,770
_04158
Position (kb) 22
23
24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 21.555 kb on + strand, within MIT1002_04155 at 21.562 kb on - strand, within MIT1002_04155 at 21.563 kb on - strand, within MIT1002_04155 at 21.598 kb on + strand, within MIT1002_04155 at 21.599 kb on - strand, within MIT1002_04155 at 21.606 kb on - strand, within MIT1002_04155 at 21.606 kb on - strand, within MIT1002_04155 at 21.606 kb on - strand, within MIT1002_04155 at 21.606 kb on - strand, within MIT1002_04155 at 21.770 kb on - strand, within MIT1002_04155 at 21.774 kb on + strand, within MIT1002_04155 at 21.774 kb on + strand, within MIT1002_04155 at 21.837 kb on + strand, within MIT1002_04155 at 21.855 kb on + strand, within MIT1002_04155 at 21.863 kb on - strand, within MIT1002_04155 at 21.863 kb on - strand, within MIT1002_04155 at 21.868 kb on - strand, within MIT1002_04155 at 21.888 kb on + strand, within MIT1002_04155 at 22.025 kb on - strand, within MIT1002_04155 at 22.031 kb on + strand at 22.078 kb on + strand at 22.078 kb on + strand at 22.269 kb on + strand at 22.323 kb on + strand at 22.323 kb on + strand at 22.331 kb on - strand at 22.331 kb on - strand at 22.331 kb on - strand at 22.344 kb on + strand at 22.352 kb on - strand at 22.362 kb on - strand at 22.485 kb on + strand at 22.526 kb on - strand at 22.558 kb on + strand at 22.582 kb on + strand at 22.688 kb on + strand at 22.704 kb on - strand at 22.744 kb on + strand at 22.793 kb on + strand, within MIT1002_04156 at 22.797 kb on - strand, within MIT1002_04156 at 22.867 kb on - strand, within MIT1002_04156 at 22.943 kb on + strand, within MIT1002_04156 at 22.947 kb on + strand, within MIT1002_04156 at 22.965 kb on - strand, within MIT1002_04156 at 22.974 kb on + strand, within MIT1002_04156 at 22.974 kb on + strand, within MIT1002_04156 at 22.974 kb on + strand, within MIT1002_04156 at 22.974 kb on + strand, within MIT1002_04156 at 22.974 kb on + strand, within MIT1002_04156 at 22.974 kb on + strand, within MIT1002_04156 at 22.982 kb on - strand, within MIT1002_04156 at 22.982 kb on - strand, within MIT1002_04156 at 22.982 kb on - strand, within MIT1002_04156 at 22.982 kb on - strand, within MIT1002_04156 at 22.982 kb on - strand, within MIT1002_04156 at 22.982 kb on - strand, within MIT1002_04156 at 22.998 kb on - strand, within MIT1002_04156 at 23.042 kb on + strand, within MIT1002_04156 at 23.050 kb on - strand, within MIT1002_04156 at 23.126 kb on + strand, within MIT1002_04156 at 23.130 kb on + strand, within MIT1002_04156 at 23.190 kb on - strand, within MIT1002_04156 at 23.190 kb on - strand, within MIT1002_04156 at 23.265 kb on + strand, within MIT1002_04156 at 23.266 kb on - strand, within MIT1002_04156 at 23.363 kb on - strand, within MIT1002_04156 at 23.389 kb on + strand, within MIT1002_04156 at 23.402 kb on + strand, within MIT1002_04156 at 23.402 kb on - strand, within MIT1002_04156 at 23.410 kb on - strand, within MIT1002_04156 at 23.410 kb on - strand, within MIT1002_04156 at 23.468 kb on + strand, within MIT1002_04156 at 23.520 kb on + strand, within MIT1002_04156 at 23.520 kb on + strand, within MIT1002_04156 at 23.580 kb on - strand, within MIT1002_04156 at 23.591 kb on - strand, within MIT1002_04156 at 23.668 kb on + strand, within MIT1002_04156 at 23.762 kb on + strand, within MIT1002_04156 at 23.801 kb on - strand, within MIT1002_04156 at 23.809 kb on + strand, within MIT1002_04156 at 23.812 kb on + strand, within MIT1002_04156 at 23.820 kb on - strand, within MIT1002_04156 at 23.890 kb on - strand, within MIT1002_04156 at 23.900 kb on - strand, within MIT1002_04156 at 23.918 kb on - strand, within MIT1002_04156 at 23.944 kb on - strand, within MIT1002_04156 at 24.198 kb on + strand, within MIT1002_04156 at 24.235 kb on - strand, within MIT1002_04156 at 24.265 kb on + strand, within MIT1002_04156 at 24.266 kb on + strand, within MIT1002_04156 at 24.274 kb on + strand, within MIT1002_04156 at 24.282 kb on - strand, within MIT1002_04156 at 24.322 kb on - strand, within MIT1002_04156 at 24.355 kb on - strand, within MIT1002_04156 at 24.409 kb on + strand, within MIT1002_04156 at 24.434 kb on + strand, within MIT1002_04156 at 24.442 kb on - strand, within MIT1002_04156 at 24.442 kb on - strand, within MIT1002_04156 at 24.455 kb on + strand, within MIT1002_04156 at 24.509 kb on - strand, within MIT1002_04156 at 24.584 kb on - strand, within MIT1002_04156 at 24.620 kb on - strand, within MIT1002_04156 at 24.634 kb on - strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.659 kb on + strand, within MIT1002_04156 at 24.667 kb on - strand, within MIT1002_04156 at 24.667 kb on - strand, within MIT1002_04156 at 24.768 kb on + strand at 24.783 kb on - strand at 24.783 kb on - strand at 24.788 kb on - strand at 24.788 kb on - strand at 24.889 kb on + strand at 24.902 kb on - strand at 24.912 kb on - strand at 25.041 kb on - strand at 25.079 kb on - strand at 25.090 kb on - strand at 25.123 kb on - strand at 25.161 kb on + strand at 25.179 kb on - strand at 25.247 kb on + strand at 25.288 kb on + strand at 25.312 kb on - strand at 25.316 kb on - strand at 25.327 kb on + strand at 25.354 kb on - strand at 25.575 kb on + strand, within MIT1002_04157 at 25.577 kb on - strand, within MIT1002_04157 at 25.601 kb on + strand, within MIT1002_04157 at 25.601 kb on + strand, within MIT1002_04157 at 25.609 kb on - strand, within MIT1002_04157 at 25.706 kb on - strand, within MIT1002_04157 at 25.874 kb on + strand at 25.874 kb on + strand at 25.882 kb on - strand at 25.882 kb on - strand at 25.882 kb on - strand at 25.903 kb on + strand, within MIT1002_04158 at 25.941 kb on - strand, within MIT1002_04158 at 25.941 kb on - strand, within MIT1002_04158 at 25.985 kb on + strand, within MIT1002_04158 at 25.993 kb on - strand, within MIT1002_04158
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 21,555 + MIT1002_04155 0.62 -0.3 21,562 - MIT1002_04155 0.62 -0.9 21,563 - MIT1002_04155 0.62 +2.4 21,598 + MIT1002_04155 0.64 +1.7 21,599 - MIT1002_04155 0.65 -0.5 21,606 - MIT1002_04155 0.65 +0.5 21,606 - MIT1002_04155 0.65 -0.2 21,606 - MIT1002_04155 0.65 +1.4 21,606 - MIT1002_04155 0.65 +0.4 21,770 - MIT1002_04155 0.75 -2.2 21,774 + MIT1002_04155 0.75 +0.6 21,774 + MIT1002_04155 0.75 -3.6 21,837 + MIT1002_04155 0.79 +0.5 21,855 + MIT1002_04155 0.80 +0.5 21,863 - MIT1002_04155 0.80 +0.5 21,863 - MIT1002_04155 0.80 +1.0 21,868 - MIT1002_04155 0.81 -1.5 21,888 + MIT1002_04155 0.82 -1.2 22,025 - MIT1002_04155 0.90 -0.7 22,031 + +0.6 22,078 + -1.3 22,078 + +0.8 22,269 + +0.5 22,323 + -1.0 22,323 + +0.1 22,331 - +0.7 22,331 - -0.0 22,331 - +0.4 22,344 + +0.1 22,352 - -1.7 22,362 - -0.0 22,485 + -0.0 22,526 - -0.8 22,558 + +0.7 22,582 + +0.8 22,688 + -0.8 22,704 - +2.0 22,744 + -0.6 22,793 + MIT1002_04156 0.11 -0.3 22,797 - MIT1002_04156 0.11 +0.5 22,867 - MIT1002_04156 0.14 -1.4 22,943 + MIT1002_04156 0.17 +0.9 22,947 + MIT1002_04156 0.17 +0.4 22,965 - MIT1002_04156 0.18 -0.7 22,974 + MIT1002_04156 0.18 +0.3 22,974 + MIT1002_04156 0.18 +0.7 22,974 + MIT1002_04156 0.18 +0.8 22,974 + MIT1002_04156 0.18 +0.0 22,974 + MIT1002_04156 0.18 +0.6 22,974 + MIT1002_04156 0.18 -2.5 22,982 - MIT1002_04156 0.18 -0.1 22,982 - MIT1002_04156 0.18 +0.3 22,982 - MIT1002_04156 0.18 -0.6 22,982 - MIT1002_04156 0.18 +0.4 22,982 - MIT1002_04156 0.18 +0.7 22,982 - MIT1002_04156 0.18 -1.9 22,998 - MIT1002_04156 0.19 -1.0 23,042 + MIT1002_04156 0.21 +0.3 23,050 - MIT1002_04156 0.21 -0.7 23,126 + MIT1002_04156 0.24 +0.6 23,130 + MIT1002_04156 0.24 +0.5 23,190 - MIT1002_04156 0.27 -0.8 23,190 - MIT1002_04156 0.27 -0.9 23,265 + MIT1002_04156 0.30 +2.1 23,266 - MIT1002_04156 0.30 +0.4 23,363 - MIT1002_04156 0.34 +1.7 23,389 + MIT1002_04156 0.35 +0.9 23,402 + MIT1002_04156 0.35 +0.1 23,402 - MIT1002_04156 0.35 -1.2 23,410 - MIT1002_04156 0.36 -0.4 23,410 - MIT1002_04156 0.36 +0.4 23,468 + MIT1002_04156 0.38 +0.0 23,520 + MIT1002_04156 0.40 +0.1 23,520 + MIT1002_04156 0.40 -0.7 23,580 - MIT1002_04156 0.43 -0.2 23,591 - MIT1002_04156 0.43 +0.2 23,668 + MIT1002_04156 0.46 +2.0 23,762 + MIT1002_04156 0.50 -2.7 23,801 - MIT1002_04156 0.51 -0.5 23,809 + MIT1002_04156 0.52 +1.1 23,812 + MIT1002_04156 0.52 -0.7 23,820 - MIT1002_04156 0.52 +0.1 23,890 - MIT1002_04156 0.55 -0.4 23,900 - MIT1002_04156 0.55 -0.8 23,918 - MIT1002_04156 0.56 -1.4 23,944 - MIT1002_04156 0.57 +0.1 24,198 + MIT1002_04156 0.67 +1.1 24,235 - MIT1002_04156 0.69 -1.8 24,265 + MIT1002_04156 0.70 +0.5 24,266 + MIT1002_04156 0.70 -0.4 24,274 + MIT1002_04156 0.71 -0.0 24,282 - MIT1002_04156 0.71 +2.0 24,322 - MIT1002_04156 0.72 +1.2 24,355 - MIT1002_04156 0.74 +0.1 24,409 + MIT1002_04156 0.76 +0.2 24,434 + MIT1002_04156 0.77 +0.1 24,442 - MIT1002_04156 0.77 -0.1 24,442 - MIT1002_04156 0.77 -0.5 24,455 + MIT1002_04156 0.78 +1.8 24,509 - MIT1002_04156 0.80 +0.1 24,584 - MIT1002_04156 0.83 +0.1 24,620 - MIT1002_04156 0.85 +1.1 24,634 - MIT1002_04156 0.85 +0.1 24,659 + MIT1002_04156 0.86 -0.6 24,659 + MIT1002_04156 0.86 -0.0 24,659 + MIT1002_04156 0.86 +1.1 24,659 + MIT1002_04156 0.86 -0.0 24,667 - MIT1002_04156 0.86 -0.7 24,667 - MIT1002_04156 0.86 -0.3 24,768 + +0.7 24,783 - -0.6 24,783 - -0.4 24,788 - -1.6 24,788 - +0.1 24,889 + +1.4 24,902 - -0.6 24,912 - -1.0 25,041 - +0.3 25,079 - -0.8 25,090 - -0.3 25,123 - -0.7 25,161 + +0.1 25,179 - -1.1 25,247 + -0.3 25,288 + +0.8 25,312 - -0.3 25,316 - -0.2 25,327 + +0.0 25,354 - +0.3 25,575 + MIT1002_04157 0.47 +1.8 25,577 - MIT1002_04157 0.47 -0.7 25,601 + MIT1002_04157 0.53 +0.2 25,601 + MIT1002_04157 0.53 -3.4 25,609 - MIT1002_04157 0.54 +0.4 25,706 - MIT1002_04157 0.76 +1.4 25,874 + +0.1 25,874 + +0.1 25,882 - +1.0 25,882 - -0.9 25,882 - +0.2 25,903 + MIT1002_04158 0.11 +0.1 25,941 - MIT1002_04158 0.15 +0.4 25,941 - MIT1002_04158 0.15 +0.3 25,985 + MIT1002_04158 0.19 +0.2 25,993 - MIT1002_04158 0.20 +0.4
Or see this region's nucleotide sequence