Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04074

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
4,571,845	+		MIT1002_04073	0.22	-0.6
4,571,909	+		MIT1002_04073	0.27	-2.1
4,571,977	-		MIT1002_04073	0.33	+0.6
4,571,990	+		MIT1002_04073	0.34	+0.5
4,571,993	-		MIT1002_04073	0.34	+1.2
4,572,009	+		MIT1002_04073	0.35	-0.4
4,572,038	+		MIT1002_04073	0.38	+1.0
4,572,038	+		MIT1002_04073	0.38	+1.2
4,572,038	+		MIT1002_04073	0.38	-3.4
4,572,038	+		MIT1002_04073	0.38	+1.7
4,572,046	-		MIT1002_04073	0.38	-1.4
4,572,046	-		MIT1002_04073	0.38	-0.1
4,572,046	-		MIT1002_04073	0.38	+0.3
4,572,104	+		MIT1002_04073	0.43	+0.4
4,572,104	+		MIT1002_04073	0.43	+1.6
4,572,104	+		MIT1002_04073	0.43	+0.0
4,572,112	-		MIT1002_04073	0.44	+0.1
4,572,149	+		MIT1002_04073	0.47	-2.1
4,572,162	-		MIT1002_04073	0.48	-1.0
4,572,181	-		MIT1002_04073	0.50	-3.6
4,572,311	-		MIT1002_04073	0.60	+0.2
4,572,311	-		MIT1002_04073	0.60	-0.2
4,572,311	-		MIT1002_04073	0.60	+1.3
4,572,325	-		MIT1002_04073	0.62	-1.2
4,572,331	-		MIT1002_04073	0.62	+0.1
4,572,343	+		MIT1002_04073	0.63	+0.4
4,572,391	+		MIT1002_04073	0.67	+0.6
4,572,496	+		MIT1002_04073	0.76	-0.1
4,572,500	-		MIT1002_04073	0.76	+0.5
4,572,501	+		MIT1002_04073	0.76	+0.9
4,572,514	-		MIT1002_04073	0.77	+0.2
4,572,519	-		MIT1002_04073	0.78	-0.2
4,572,520	-		MIT1002_04073	0.78	+0.2
4,572,535	+		MIT1002_04073	0.79	-0.2
4,572,542	+		MIT1002_04073	0.79	-0.2
4,572,545	-		MIT1002_04073	0.80	-0.5
4,572,568	+		MIT1002_04073	0.82	-0.7
4,572,568	+		MIT1002_04073	0.82	-0.5
4,572,595	-		MIT1002_04073	0.84	+1.3
4,572,596	+		MIT1002_04073	0.84	+0.0
4,572,643	+		MIT1002_04073	0.88	-3.2
4,572,643	+		MIT1002_04073	0.88	+0.7
4,572,651	-		MIT1002_04073	0.89	-0.8
4,572,651	-		MIT1002_04073	0.89	-3.5
4,572,651	-		MIT1002_04073	0.89	+0.6
4,572,651	-		MIT1002_04073	0.89	-0.3
4,572,662	+		MIT1002_04073	0.89	-0.5
4,572,670	-				+0.0
4,572,670	-				+1.3
4,572,672	+				+0.4
4,572,677	+				+0.2
4,572,685	-				+1.9
4,572,698	+				-0.6
4,572,698	+				+0.4
4,572,698	+				+0.1
4,572,698	+				+1.8
4,572,698	+				-0.2
4,572,698	+				+0.6
4,572,706	-				-0.7
4,572,706	-				-0.5
4,572,798	-				+0.0
4,572,812	+				-0.2
4,572,887	+				-3.4
4,572,888	+				-0.3
4,572,888	+				-0.7
4,572,889	+				+1.8
4,572,889	+				+0.5
4,572,889	+				+1.3
4,572,895	-		MIT1002_04074	0.11	-1.1
4,572,897	-		MIT1002_04074	0.11	-0.3
4,572,897	-		MIT1002_04074	0.11	+0.8
4,572,897	-		MIT1002_04074	0.11	+0.9
4,572,897	-		MIT1002_04074	0.11	-3.0
4,572,897	-		MIT1002_04074	0.11	+0.0
4,572,897	-		MIT1002_04074	0.11	+0.8
4,572,920	-		MIT1002_04074	0.14	-0.6
4,572,921	-		MIT1002_04074	0.15	+0.2
4,572,946	+		MIT1002_04074	0.19	-0.2
4,572,951	+		MIT1002_04074	0.19	-0.2
4,572,953	-		MIT1002_04074	0.20	-2.0
4,572,953	-		MIT1002_04074	0.20	+0.6
4,572,953	-		MIT1002_04074	0.20	+0.1
4,572,955	-		MIT1002_04074	0.20	+0.5
4,572,955	-		MIT1002_04074	0.20	+1.2
4,572,955	-		MIT1002_04074	0.20	-0.3
4,572,955	-		MIT1002_04074	0.20	+0.1
4,572,955	-		MIT1002_04074	0.20	-1.3
4,572,955	-		MIT1002_04074	0.20	-0.8
4,572,955	-		MIT1002_04074	0.20	-0.3
4,572,977	-		MIT1002_04074	0.23	-2.8
4,573,015	+		MIT1002_04074	0.29	+0.2
4,573,052	-		MIT1002_04074	0.35	+1.4
4,573,062	-		MIT1002_04074	0.37	-0.8
4,573,067	-		MIT1002_04074	0.38	-0.9
4,573,075	-		MIT1002_04074	0.39	-0.6
4,573,075	-		MIT1002_04074	0.39	+0.3
4,573,083	+		MIT1002_04074	0.40	-0.6
4,573,083	+		MIT1002_04074	0.40	+0.4
4,573,090	+		MIT1002_04074	0.41	+0.7
4,573,168	+		MIT1002_04074	0.53	-0.2
4,573,178	+		MIT1002_04074	0.55	-1.9
4,573,186	-		MIT1002_04074	0.56	-1.6
4,573,196	+		MIT1002_04074	0.58	+0.6
4,573,196	+		MIT1002_04074	0.58	+1.9
4,573,196	+		MIT1002_04074	0.58	-0.2
4,573,197	-		MIT1002_04074	0.58	-2.2
4,573,201	+		MIT1002_04074	0.59	+0.7
4,573,204	-		MIT1002_04074	0.59	+0.2
4,573,204	-		MIT1002_04074	0.59	+0.1
4,573,204	-		MIT1002_04074	0.59	-0.0
4,573,204	-		MIT1002_04074	0.59	+0.7
4,573,204	-		MIT1002_04074	0.59	-0.2
4,573,204	-		MIT1002_04074	0.59	-0.5
4,573,204	-		MIT1002_04074	0.59	+1.6
4,573,241	-		MIT1002_04074	0.65	-0.7
4,573,246	-		MIT1002_04074	0.66	-2.5
4,573,259	-		MIT1002_04074	0.68	-1.2
4,573,267	-		MIT1002_04074	0.69	+0.1
4,573,267	-		MIT1002_04074	0.69	-0.6
4,573,272	-		MIT1002_04074	0.70	-0.4
4,573,273	+		MIT1002_04074	0.70	+0.0
4,573,273	+		MIT1002_04074	0.70	-1.9
4,573,273	+		MIT1002_04074	0.70	-0.6
4,573,281	-		MIT1002_04074	0.71	+0.0
4,573,281	-		MIT1002_04074	0.71	-0.6
4,573,315	-		MIT1002_04074	0.77	+0.1
4,573,327	-		MIT1002_04074	0.78	+0.2
4,573,328	-		MIT1002_04074	0.79	+0.5
4,573,328	-		MIT1002_04074	0.79	+0.1
4,573,329	-		MIT1002_04074	0.79	-0.8
4,573,347	-		MIT1002_04074	0.82	-1.6
4,573,347	-		MIT1002_04074	0.82	-0.9
4,573,349	+		MIT1002_04074	0.82	-0.8
4,573,349	+		MIT1002_04074	0.82	+0.1
4,573,351	+		MIT1002_04074	0.82	-0.6
4,573,357	-		MIT1002_04074	0.83	-0.4
4,573,357	-		MIT1002_04074	0.83	+0.7
4,573,362	+		MIT1002_04074	0.84	+0.1
4,573,367	+		MIT1002_04074	0.85	-0.2
4,573,367	+		MIT1002_04074	0.85	+0.4
4,573,370	-		MIT1002_04074	0.85	-0.8
4,573,377	+		MIT1002_04074	0.86	-0.1
4,573,382	+		MIT1002_04074	0.87	+2.1
4,573,430	+				-0.1
4,573,457	+				-0.3
4,573,457	+				+0.4
4,573,457	+				+0.2
4,573,508	+		MIT1002_04075	0.28	-1.2
4,573,508	+		MIT1002_04075	0.28	-0.0
4,573,516	-		MIT1002_04075	0.31	-1.2
4,573,517	-		MIT1002_04075	0.32	-1.7
4,573,527	-		MIT1002_04075	0.36	-0.4
4,573,527	-		MIT1002_04075	0.36	+1.2
4,573,546	+		MIT1002_04075	0.43	-0.4
4,573,585	+		MIT1002_04075	0.59	-0.2
4,573,715	-		MIT1002_04076	0.15	+1.4
4,573,730	+		MIT1002_04076	0.20	-1.4
4,573,730	+		MIT1002_04076	0.20	+0.7
4,573,766	+		MIT1002_04076	0.34	+0.9
4,573,766	+		MIT1002_04076	0.34	-0.5
4,573,766	+		MIT1002_04076	0.34	+0.4
4,573,767	-		MIT1002_04076	0.34	+0.9
4,573,774	-		MIT1002_04076	0.37	-0.9
4,573,774	-		MIT1002_04076	0.37	-0.9
4,573,774	-		MIT1002_04076	0.37	+0.0
4,573,822	+		MIT1002_04076	0.56	+0.3
4,573,823	-		MIT1002_04076	0.56	+0.6
4,573,827	+		MIT1002_04076	0.57	-0.2
4,573,828	-		MIT1002_04076	0.58	-0.1
4,573,830	-		MIT1002_04076	0.59	+0.7
4,573,830	-		MIT1002_04076	0.59	+0.9
4,573,835	-		MIT1002_04076	0.61	-2.8
4,573,835	-		MIT1002_04076	0.61	+0.8
4,573,835	-		MIT1002_04076	0.61	-1.0
4,573,835	-		MIT1002_04076	0.61	-0.3
4,573,840	-		MIT1002_04076	0.62	-2.0
4,573,841	+		MIT1002_04076	0.63	-2.3
4,573,841	+		MIT1002_04076	0.63	-2.4
4,573,841	+		MIT1002_04076	0.63	+1.1
4,573,841	+		MIT1002_04076	0.63	+0.8
4,573,866	+		MIT1002_04076	0.72	+0.7
4,573,874	-		MIT1002_04076	0.75	-0.7
4,574,108	+				-0.9
4,574,110	-		MIT1002_04077	0.10	-2.1
4,574,113	+		MIT1002_04077	0.10	-0.7
4,574,113	+		MIT1002_04077	0.10	-0.0
4,574,113	+		MIT1002_04077	0.10	+0.6
4,574,113	+		MIT1002_04077	0.10	-0.4
4,574,113	+		MIT1002_04077	0.10	-1.2
4,574,113	+		MIT1002_04077	0.10	-0.4
4,574,113	+		MIT1002_04077	0.10	-0.2
4,574,113	+		MIT1002_04077	0.10	-1.7
4,574,121	-		MIT1002_04077	0.11	-0.4
4,574,121	-		MIT1002_04077	0.11	-0.8
4,574,121	-		MIT1002_04077	0.11	-0.6
4,574,121	-		MIT1002_04077	0.11	+0.6
4,574,149	-		MIT1002_04077	0.12	-0.7
4,574,212	+		MIT1002_04077	0.16	+0.8
4,574,272	-		MIT1002_04077	0.19	-1.1
4,574,330	-		MIT1002_04077	0.23	-0.3
4,574,381	-		MIT1002_04077	0.26	-0.3