Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03705

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
4,137,479	+		MIT1002_03704	0.27	-0.1
4,137,479	+		MIT1002_03704	0.27	+0.3
4,137,506	+		MIT1002_03704	0.30	-0.3
4,137,542	+		MIT1002_03704	0.33	-0.5
4,137,559	+		MIT1002_03704	0.35	+1.2
4,137,559	+		MIT1002_03704	0.35	+0.3
4,137,559	+		MIT1002_03704	0.35	+0.3
4,137,559	+		MIT1002_03704	0.35	+1.8
4,137,559	+		MIT1002_03704	0.35	-0.7
4,137,559	+		MIT1002_03704	0.35	+0.3
4,137,567	-		MIT1002_03704	0.35	+1.0
4,137,567	-		MIT1002_03704	0.35	-0.4
4,137,567	-		MIT1002_03704	0.35	-0.5
4,137,567	-		MIT1002_03704	0.35	-0.5
4,137,567	-		MIT1002_03704	0.35	+0.1
4,137,567	-		MIT1002_03704	0.35	-1.0
4,137,603	+		MIT1002_03704	0.39	-0.9
4,137,638	-		MIT1002_03704	0.42	-0.2
4,137,646	+		MIT1002_03704	0.43	-1.9
4,137,716	+		MIT1002_03704	0.49	+0.9
4,137,718	+		MIT1002_03704	0.49	-0.5
4,137,725	-		MIT1002_03704	0.50	-0.3
4,137,758	+		MIT1002_03704	0.53	-0.6
4,137,769	+		MIT1002_03704	0.54	-0.9
4,137,769	+		MIT1002_03704	0.54	-1.4
4,137,775	+		MIT1002_03704	0.54	-1.0
4,137,777	-		MIT1002_03704	0.54	-0.1
4,137,828	+		MIT1002_03704	0.59	+0.1
4,137,828	+		MIT1002_03704	0.59	+0.1
4,137,975	+		MIT1002_03704	0.72	-0.2
4,137,990	+		MIT1002_03704	0.74	+2.3
4,137,996	-		MIT1002_03704	0.74	+0.0
4,138,010	+		MIT1002_03704	0.76	-0.2
4,138,011	-		MIT1002_03704	0.76	+1.6
4,138,026	-		MIT1002_03704	0.77	+0.4
4,138,041	-		MIT1002_03704	0.78	-0.9
4,138,069	-		MIT1002_03704	0.81	-1.6
4,138,083	-		MIT1002_03704	0.82	-0.1
4,138,112	+		MIT1002_03704	0.85	-3.5
4,138,121	+		MIT1002_03704	0.86	-0.0
4,138,129	-		MIT1002_03704	0.86	-1.8
4,138,187	+				-1.1
4,138,230	+				-2.2
4,138,230	+				-0.3
4,138,230	+				-0.0
4,138,235	+				+0.5
4,138,235	+				+1.2
4,138,265	+				-0.8
4,138,265	+				-0.2
4,138,290	+				-1.3
4,138,296	+				-0.3
4,138,296	+				+1.1
4,138,296	+				+0.3
4,138,304	-				-0.2
4,138,347	-				-0.6
4,138,365	-				+0.1
4,138,367	+				-0.5
4,138,369	+				+0.9
4,138,369	+				+1.0
4,138,375	-				+0.2
4,138,501	+		MIT1002_03705	0.17	+0.2
4,138,501	+		MIT1002_03705	0.17	-0.3
4,138,530	-		MIT1002_03705	0.20	-0.2
4,138,549	-		MIT1002_03705	0.21	+0.1
4,138,578	-		MIT1002_03705	0.24	-0.1
4,138,629	+		MIT1002_03705	0.28	-0.6
4,138,658	+		MIT1002_03705	0.30	+1.0
4,138,658	-		MIT1002_03705	0.30	-0.2
4,138,708	+		MIT1002_03705	0.35	+0.8
4,138,778	+		MIT1002_03705	0.41	+1.1
4,138,786	-		MIT1002_03705	0.41	+2.4
4,138,793	-		MIT1002_03705	0.42	-0.3
4,138,793	-		MIT1002_03705	0.42	-0.1
4,138,825	+		MIT1002_03705	0.45	-0.4
4,138,825	+		MIT1002_03705	0.45	+0.0
4,138,831	-		MIT1002_03705	0.45	-1.4
4,138,865	+		MIT1002_03705	0.48	+0.2
4,138,865	+		MIT1002_03705	0.48	-0.9
4,138,890	+		MIT1002_03705	0.50	-1.7
4,138,950	+		MIT1002_03705	0.55	+0.5
4,139,026	-		MIT1002_03705	0.62	-1.4
4,139,028	+		MIT1002_03705	0.62	-0.6
4,139,139	+		MIT1002_03705	0.71	-0.3
4,139,189	-		MIT1002_03705	0.75	-1.6
4,139,337	-		MIT1002_03705	0.88	+2.1
4,139,356	-		MIT1002_03705	0.90	+1.0
4,139,615	+				+0.1
4,139,623	-				+0.4
4,139,623	-				-0.5
4,139,623	-				-0.4
4,139,679	-		MIT1002_03706	0.14	-0.1
4,139,762	+		MIT1002_03706	0.22	+2.2
4,139,770	-		MIT1002_03706	0.22	-2.8
4,139,788	+		MIT1002_03706	0.24	-0.5
4,139,845	+		MIT1002_03706	0.29	+1.0
4,139,845	+		MIT1002_03706	0.29	+0.0
4,139,853	-		MIT1002_03706	0.30	-0.2
4,139,853	-		MIT1002_03706	0.30	-1.7
4,139,867	+		MIT1002_03706	0.31	+0.6
4,139,982	-		MIT1002_03706	0.42	+0.2
4,139,989	+		MIT1002_03706	0.43	+0.2
4,140,001	+		MIT1002_03706	0.44	+0.0
4,140,011	+		MIT1002_03706	0.45	-0.4
4,140,093	+		MIT1002_03706	0.52	+0.0
4,140,107	+		MIT1002_03706	0.54	+1.1
4,140,110	+		MIT1002_03706	0.54	-0.5
4,140,120	+		MIT1002_03706	0.55	+0.6
4,140,128	-		MIT1002_03706	0.55	-1.0
4,140,142	-		MIT1002_03706	0.57	+0.8
4,140,214	+		MIT1002_03706	0.63	-0.4
4,140,269	-		MIT1002_03706	0.69	+0.2
4,140,317	+		MIT1002_03706	0.73	+0.1
4,140,354	+		MIT1002_03706	0.76	-2.4
4,140,354	+		MIT1002_03706	0.76	-2.4
4,140,392	+		MIT1002_03706	0.80	-0.0
4,140,404	+		MIT1002_03706	0.81	-1.2
4,140,420	-		MIT1002_03706	0.82	+0.6
4,140,439	+		MIT1002_03706	0.84	-0.5