Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03321

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
3,707,444	+		MIT1002_03320	0.58	+1.9
3,707,452	-		MIT1002_03320	0.58	+0.6
3,707,452	-		MIT1002_03320	0.58	-0.2
3,707,452	-		MIT1002_03320	0.58	-2.6
3,707,600	+		MIT1002_03320	0.65	-0.5
3,707,623	-		MIT1002_03320	0.66	-1.5
3,707,708	+		MIT1002_03320	0.70	-0.6
3,707,821	-		MIT1002_03320	0.76	-0.0
3,707,881	+		MIT1002_03320	0.78	-1.9
3,707,895	+		MIT1002_03320	0.79	+0.1
3,708,003	+		MIT1002_03320	0.84	+0.2
3,708,003	+		MIT1002_03320	0.84	-0.3
3,708,003	+		MIT1002_03320	0.84	+1.0
3,708,011	-		MIT1002_03320	0.85	-0.1
3,708,040	-		MIT1002_03320	0.86	-0.5
3,708,059	+		MIT1002_03320	0.87	-0.4
3,708,204	+				-0.1
3,708,276	-				+0.6
3,708,367	+				-2.5
3,708,368	-				+0.8
3,708,375	-				-0.9
3,708,390	+				-4.6
3,708,399	-				-1.5
3,708,514	+				-3.8
3,708,515	-				-4.1
3,708,574	-		MIT1002_03321	0.13	-4.5
3,708,590	+		MIT1002_03321	0.14	-2.5
3,708,590	+		MIT1002_03321	0.14	-3.7
3,708,590	+		MIT1002_03321	0.14	-3.0
3,708,590	+		MIT1002_03321	0.14	-1.2
3,708,590	+		MIT1002_03321	0.14	-4.0
3,708,590	+		MIT1002_03321	0.14	-2.7
3,708,598	-		MIT1002_03321	0.15	-1.5
3,708,598	-		MIT1002_03321	0.15	-4.8
3,708,598	-		MIT1002_03321	0.15	-2.3
3,708,606	+		MIT1002_03321	0.15	-3.9
3,708,607	+		MIT1002_03321	0.15	-1.9
3,708,607	+		MIT1002_03321	0.15	-2.0
3,708,651	-		MIT1002_03321	0.18	-3.1
3,708,667	-		MIT1002_03321	0.19	-1.0
3,708,703	+		MIT1002_03321	0.22	-3.4
3,708,722	+		MIT1002_03321	0.23	-4.2
3,708,747	-		MIT1002_03321	0.25	-3.8
3,708,804	+		MIT1002_03321	0.28	-3.0
3,708,812	-		MIT1002_03321	0.29	-1.9
3,708,855	+		MIT1002_03321	0.32	-2.4
3,708,858	-		MIT1002_03321	0.32	-3.9
3,708,858	-		MIT1002_03321	0.32	-5.8
3,708,984	+		MIT1002_03321	0.40	-1.3
3,709,010	-		MIT1002_03321	0.42	-2.5
3,709,019	+		MIT1002_03321	0.42	-4.0
3,709,105	+		MIT1002_03321	0.48	-2.9
3,709,105	+		MIT1002_03321	0.48	-0.7
3,709,113	-		MIT1002_03321	0.49	-1.3
3,709,140	-		MIT1002_03321	0.50	-2.7
3,709,147	+		MIT1002_03321	0.51	-2.4
3,709,162	+		MIT1002_03321	0.52	-3.8
3,709,172	-		MIT1002_03321	0.53	-1.7
3,709,258	-		MIT1002_03321	0.58	-3.8
3,709,258	-		MIT1002_03321	0.58	-3.7
3,709,273	+		MIT1002_03321	0.59	-5.2
3,709,349	-		MIT1002_03321	0.64	-4.7
3,709,380	+		MIT1002_03321	0.66	-2.6
3,709,380	+		MIT1002_03321	0.66	+0.6
3,709,380	+		MIT1002_03321	0.66	-5.4
3,709,388	-		MIT1002_03321	0.67	-3.0
3,709,504	-		MIT1002_03321	0.74	-1.9
3,709,522	+		MIT1002_03321	0.76	-1.9
3,709,522	+		MIT1002_03321	0.76	-1.4
3,709,525	-		MIT1002_03321	0.76	-3.4
3,709,611	-		MIT1002_03321	0.81	-2.4
3,709,665	-		MIT1002_03321	0.85	-6.2
3,709,682	-		MIT1002_03321	0.86	-2.5
3,709,687	-		MIT1002_03321	0.86	-3.6
3,709,723	+		MIT1002_03321	0.89	-3.5
3,709,731	-		MIT1002_03321	0.89	-1.0
3,709,794	+				-4.2
3,709,794	+				-4.6
3,709,794	+				-3.1
3,709,795	-				-1.3
3,709,802	-				-3.9
3,709,802	-				-3.8
3,709,802	-				-4.5
3,709,802	-				-1.7
3,709,869	-				-1.0
3,709,877	-				-4.0
3,709,881	+				-3.1
3,709,965	+				-2.8
3,709,975	+				-2.5
3,710,051	+				-1.0
3,710,074	+				-2.5
3,710,089	-				-0.1
3,710,148	-		MIT1002_03322	0.17	-1.8
3,710,162	+		MIT1002_03322	0.19	+1.5
3,710,182	+		MIT1002_03322	0.22	-1.7
3,710,203	-		MIT1002_03322	0.25	-1.0
3,710,281	+		MIT1002_03322	0.36	-0.8
3,710,281	+		MIT1002_03322	0.36	+0.2
3,710,427	+		MIT1002_03322	0.58	-0.6
3,710,427	+		MIT1002_03322	0.58	-0.9
3,710,440	-		MIT1002_03322	0.60	-2.6
3,710,442	+		MIT1002_03322	0.60	-3.6
3,710,660	-				-3.1
3,710,660	-				+0.2
3,710,749	+				+0.9
3,710,749	+				-3.7
3,710,749	+				-0.6
3,710,749	+				+0.2
3,710,757	-				-1.0
3,710,757	-				-2.3
3,710,814	+				-2.0
3,710,817	-				-1.3
3,710,829	-				-4.2
3,710,843	-		MIT1002_03323	0.11	-1.2