Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03282

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
3,656,390	-		MIT1002_03281	0.29	-3.3
3,656,462	+		MIT1002_03281	0.34	-2.3
3,656,491	+		MIT1002_03281	0.36	-1.4
3,656,491	+		MIT1002_03281	0.36	-0.2
3,656,491	+		MIT1002_03281	0.36	-0.1
3,656,498	-		MIT1002_03281	0.37	-1.2
3,656,499	-		MIT1002_03281	0.37	-3.4
3,656,499	-		MIT1002_03281	0.37	-0.1
3,656,499	-		MIT1002_03281	0.37	-1.1
3,656,499	-		MIT1002_03281	0.37	-1.0
3,656,505	+		MIT1002_03281	0.37	-1.4
3,656,579	+		MIT1002_03281	0.43	-2.9
3,656,597	-		MIT1002_03281	0.44	+1.0
3,656,614	+		MIT1002_03281	0.45	-0.7
3,656,793	+		MIT1002_03281	0.59	+0.1
3,656,802	+		MIT1002_03281	0.59	-0.8
3,656,817	+		MIT1002_03281	0.61	-0.6
3,656,817	+		MIT1002_03281	0.61	+1.0
3,656,817	+		MIT1002_03281	0.61	+0.4
3,656,825	-		MIT1002_03281	0.61	+0.3
3,656,825	-		MIT1002_03281	0.61	+0.7
3,656,881	-		MIT1002_03281	0.65	+0.3
3,656,917	+		MIT1002_03281	0.68	+3.3
3,656,966	+		MIT1002_03281	0.72	-2.2
3,656,974	-		MIT1002_03281	0.72	-1.2
3,656,979	-		MIT1002_03281	0.73	-0.2
3,657,011	+		MIT1002_03281	0.75	+2.0
3,657,054	-		MIT1002_03281	0.78	-0.6
3,657,091	+		MIT1002_03281	0.81	-0.7
3,657,091	+		MIT1002_03281	0.81	-0.3
3,657,091	+		MIT1002_03281	0.81	-1.5
3,657,091	+		MIT1002_03281	0.81	+0.3
3,657,091	+		MIT1002_03281	0.81	-0.5
3,657,099	-		MIT1002_03281	0.81	+0.9
3,657,099	-		MIT1002_03281	0.81	-2.0
3,657,099	-		MIT1002_03281	0.81	-1.3
3,657,099	-		MIT1002_03281	0.81	-0.2
3,657,136	+		MIT1002_03281	0.84	-3.0
3,657,160	+		MIT1002_03281	0.86	-0.4
3,657,202	+		MIT1002_03281	0.89	+1.7
3,657,202	+		MIT1002_03281	0.89	-0.8
3,657,210	-		MIT1002_03281	0.90	-0.7
3,657,246	-				+1.0
3,657,317	-				+0.7
3,657,351	-				+0.5
3,657,364	-				-0.6
3,657,377	+				+0.5
3,657,377	+				-2.1
3,657,389	+				-2.1
3,657,400	+				-2.0
3,657,408	-				+2.6
3,657,427	+				+0.2
3,657,431	-				+1.0
3,657,468	-		MIT1002_03282	0.12	-0.7
3,657,484	-		MIT1002_03282	0.14	+0.3
3,657,484	-		MIT1002_03282	0.14	-0.1
3,657,494	-		MIT1002_03282	0.15	+0.2
3,657,508	-		MIT1002_03282	0.17	-0.8
3,657,529	-		MIT1002_03282	0.19	-0.7
3,657,538	+		MIT1002_03282	0.20	-0.3
3,657,538	+		MIT1002_03282	0.20	+2.0
3,657,546	-		MIT1002_03282	0.20	+1.1
3,657,546	-		MIT1002_03282	0.20	-1.6
3,657,546	-		MIT1002_03282	0.20	-1.8
3,657,551	-		MIT1002_03282	0.21	+0.1
3,657,558	-		MIT1002_03282	0.22	-0.5
3,657,596	+		MIT1002_03282	0.26	-1.4
3,657,601	+		MIT1002_03282	0.26	+0.3
3,657,604	-		MIT1002_03282	0.26	+0.9
3,657,624	+		MIT1002_03282	0.28	-1.6
3,657,652	+		MIT1002_03282	0.31	+0.2
3,657,738	-		MIT1002_03282	0.40	-0.2
3,657,771	-		MIT1002_03282	0.43	+0.7
3,657,829	-		MIT1002_03282	0.49	+1.6
3,657,837	-		MIT1002_03282	0.50	-2.6
3,657,891	+		MIT1002_03282	0.56	-0.2
3,657,899	-		MIT1002_03282	0.57	+0.6
3,657,906	+		MIT1002_03282	0.57	-0.3
3,657,998	+		MIT1002_03282	0.67	-0.8
3,658,004	-		MIT1002_03282	0.67	-0.2
3,658,035	+		MIT1002_03282	0.70	-0.8
3,658,042	-		MIT1002_03282	0.71	-0.3
3,658,043	-		MIT1002_03282	0.71	-1.1
3,658,043	-		MIT1002_03282	0.71	+0.3
3,658,057	-		MIT1002_03282	0.73	+0.1
3,658,072	+		MIT1002_03282	0.74	-1.1
3,658,074	-		MIT1002_03282	0.74	+0.9
3,658,080	-		MIT1002_03282	0.75	-1.8
3,658,095	-		MIT1002_03282	0.77	-0.4
3,658,112	-		MIT1002_03282	0.78	-1.1
3,658,116	+		MIT1002_03282	0.79	-0.9
3,658,116	+		MIT1002_03282	0.79	-0.4
3,658,123	+		MIT1002_03282	0.79	-1.9
3,658,228	-				-2.4
3,658,287	+				-0.6
3,658,287	+				-1.7
3,658,293	+				+0.6
3,658,293	+				-0.9
3,658,293	+				-1.9
3,658,295	-				+1.2
3,658,301	-				-1.1
3,658,344	-				-0.9
3,658,370	-				-1.2
3,658,372	+				-0.4
3,658,372	+				-1.2
3,658,380	-				-0.4
3,658,380	-				-0.6
3,658,380	-				-1.1
3,658,384	+				-0.1
3,658,483	+		MIT1002_03283	0.23	-0.9
3,658,488	+		MIT1002_03283	0.24	+0.1
3,658,498	+		MIT1002_03283	0.25	-0.2
3,658,498	+		MIT1002_03283	0.25	-0.3
3,658,498	+		MIT1002_03283	0.25	-1.6
3,658,498	+		MIT1002_03283	0.25	+1.2
3,658,498	+		MIT1002_03283	0.25	+1.1
3,658,498	+		MIT1002_03283	0.25	-1.3
3,658,498	+		MIT1002_03283	0.25	+0.4
3,658,498	+		MIT1002_03283	0.25	-2.1
3,658,498	+		MIT1002_03283	0.25	+0.5
3,658,498	+		MIT1002_03283	0.25	-1.9
3,658,498	+		MIT1002_03283	0.25	-4.0
3,658,498	+		MIT1002_03283	0.25	+1.3
3,658,498	+		MIT1002_03283	0.25	+0.3
3,658,498	+		MIT1002_03283	0.25	-0.6
3,658,498	+		MIT1002_03283	0.25	+0.4
3,658,506	-		MIT1002_03283	0.27	+1.5
3,658,506	-		MIT1002_03283	0.27	-1.1
3,658,506	-		MIT1002_03283	0.27	-0.7
3,658,506	-		MIT1002_03283	0.27	-0.5
3,658,506	-		MIT1002_03283	0.27	-0.8
3,658,506	-		MIT1002_03283	0.27	+0.1
3,658,506	-		MIT1002_03283	0.27	+0.4
3,658,506	-		MIT1002_03283	0.27	+0.7
3,658,516	-		MIT1002_03283	0.28	-0.8
3,658,603	+		MIT1002_03283	0.40	-0.8
3,658,633	+		MIT1002_03283	0.44	+0.1
3,658,634	-		MIT1002_03283	0.44	-0.4
3,658,651	+		MIT1002_03283	0.47	-0.8
3,658,659	-		MIT1002_03283	0.48	-0.9
3,658,721	+		MIT1002_03283	0.56	-0.9
3,658,915	+		MIT1002_03283	0.83	-1.7
3,658,941	+		MIT1002_03283	0.87	-0.6
3,659,077	+				-1.7
3,659,095	+				-0.9
3,659,104	+				+0.4
3,659,104	-				+1.0
3,659,112	-				+0.4
3,659,131	+		MIT1002_03284	0.12	+1.1
3,659,219	+		MIT1002_03284	0.23	-0.8
3,659,288	+		MIT1002_03284	0.32	+1.0
3,659,288	+		MIT1002_03284	0.32	-1.6
3,659,296	-		MIT1002_03284	0.33	+0.7