Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01302

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
1,445,580	+				+0.3
1,445,580	+				-1.1
1,445,583	-				-0.1
1,445,590	+				+0.1
1,445,596	-				+1.0
1,445,598	-				-0.2
1,445,706	+				-0.7
1,445,707	+				+0.1
1,445,707	+				-1.6
1,445,707	-				-0.0
1,445,707	-				+0.8
1,445,787	+				+0.8
1,445,830	+				-0.4
1,445,847	+				+2.6
1,445,854	+				+0.7
1,445,854	+				-1.5
1,445,863	+				+0.3
1,445,984	-				+0.4
1,445,984	-				-0.1
1,446,029	-				-0.5
1,446,050	+		MIT1002_01301	0.11	+0.2
1,446,057	+		MIT1002_01301	0.13	+0.4
1,446,096	+		MIT1002_01301	0.23	-1.0
1,446,142	+		MIT1002_01301	0.35	+0.7
1,446,142	+		MIT1002_01301	0.35	-0.4
1,446,149	-		MIT1002_01301	0.36	+1.6
1,446,150	-		MIT1002_01301	0.37	-0.7
1,446,162	+		MIT1002_01301	0.40	-0.2
1,446,195	+		MIT1002_01301	0.48	-0.7
1,446,232	+		MIT1002_01301	0.58	-0.1
1,446,232	+		MIT1002_01301	0.58	-0.7
1,446,253	-		MIT1002_01301	0.63	-0.8
1,446,253	-		MIT1002_01301	0.63	+0.4
1,446,259	-		MIT1002_01301	0.64	-1.5
1,446,276	-		MIT1002_01301	0.69	+0.7
1,446,518	+				+1.5
1,446,518	+				+0.9
1,446,518	+				-1.9
1,446,520	+				-1.0
1,446,538	+				+0.5
1,446,538	+				-0.8
1,446,538	+				+0.3
1,446,546	-				+1.2
1,446,557	-				+0.0
1,446,559	+		MIT1002_01302	0.10	-1.1
1,446,565	-		MIT1002_01302	0.11	-0.3
1,446,612	-		MIT1002_01302	0.14	-1.5
1,446,628	+		MIT1002_01302	0.16	-0.0
1,446,674	+		MIT1002_01302	0.19	+0.0
1,446,674	+		MIT1002_01302	0.19	+0.7
1,446,674	+		MIT1002_01302	0.19	+0.8
1,446,687	-		MIT1002_01302	0.20	-0.9
1,446,754	+		MIT1002_01302	0.26	-0.0
1,446,762	-		MIT1002_01302	0.26	-2.7
1,446,777	+		MIT1002_01302	0.27	+0.5
1,446,777	+		MIT1002_01302	0.27	+0.5
1,446,824	+		MIT1002_01302	0.31	-0.3
1,446,832	-		MIT1002_01302	0.32	+2.0
1,446,934	-		MIT1002_01302	0.40	-0.0
1,446,934	-		MIT1002_01302	0.40	+1.7
1,446,982	-		MIT1002_01302	0.44	-0.8
1,447,038	+		MIT1002_01302	0.48	+0.7
1,447,088	+		MIT1002_01302	0.52	+0.6
1,447,142	+		MIT1002_01302	0.56	+1.0
1,447,142	+		MIT1002_01302	0.56	+0.0
1,447,205	-		MIT1002_01302	0.61	+0.1
1,447,225	+		MIT1002_01302	0.63	-0.4
1,447,274	-		MIT1002_01302	0.67	+0.1
1,447,285	+		MIT1002_01302	0.68	+0.6
1,447,341	-		MIT1002_01302	0.72	+0.2
1,447,431	+		MIT1002_01302	0.79	+1.4
1,447,449	-		MIT1002_01302	0.81	+1.8
1,447,486	+		MIT1002_01302	0.84	+0.7
1,447,517	+		MIT1002_01302	0.86	+1.5
1,447,527	+		MIT1002_01302	0.87	-0.5
1,447,560	-		MIT1002_01302	0.90	+0.3
1,447,560	-		MIT1002_01302	0.90	+0.8
1,447,585	+				-0.4
1,447,600	+				+1.2
1,447,601	+				+0.4
1,447,609	-				+1.8
1,447,609	-				+0.9
1,447,643	+				-0.7
1,447,659	-				-0.8
1,447,659	-				-0.6
1,447,674	+				+0.5
1,447,717	+				-1.2
1,447,756	+				-0.1
1,447,756	+				-1.0
1,447,757	+				-1.2
1,447,783	-				-2.6
1,447,798	+				+1.0
1,447,845	+				+0.3
1,447,876	-				-1.2
1,447,987	-				+0.1
1,448,010	+				+0.3
1,448,018	-				+0.9
1,448,091	-				-0.5
1,448,091	-				-0.0
1,448,109	+				-0.1
1,448,115	-				+1.3
1,448,135	+				-0.3
1,448,166	-				+0.7
1,448,179	-				+0.1
1,448,194	+				+0.1
1,448,305	+		MIT1002_01303	0.13	-3.7
1,448,354	+		MIT1002_01303	0.15	+0.6
1,448,354	+		MIT1002_01303	0.15	+0.0
1,448,362	-		MIT1002_01303	0.15	+0.1
1,448,373	+		MIT1002_01303	0.15	+0.1
1,448,510	-		MIT1002_01303	0.20	-0.1
1,448,545	+		MIT1002_01303	0.21	+0.9
1,448,553	-		MIT1002_01303	0.21	-0.1
1,448,556	-		MIT1002_01303	0.21	-0.3
1,448,606	-		MIT1002_01303	0.23	-0.8
1,448,621	-		MIT1002_01303	0.23	+0.7
1,448,643	+		MIT1002_01303	0.24	-0.2