Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00815

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00814 and MIT1002_00815 are separated by 1 nucleotidesMIT1002_00815 and MIT1002_00816 overlap by 4 nucleotidesMIT1002_00816 and MIT1002_00817 are separated by 168 nucleotides MIT1002_00814: MIT1002_00814 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 899,465 to 900,097 _00814 MIT1002_00815: MIT1002_00815 - Cytochrome b/c1, at 900,099 to 901,364 _00815 MIT1002_00816: MIT1002_00816 - Cytochrome c1 precursor, at 901,361 to 902,095 _00816 MIT1002_00817: MIT1002_00817 - Stringent starvation protein A, at 902,264 to 902,896 _00817 Position (kb) 900 901 902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 899.115 kb on - strandat 899.134 kb on - strandat 899.153 kb on + strandat 899.153 kb on + strandat 899.207 kb on + strandat 899.232 kb on - strandat 899.344 kb on - strandat 899.388 kb on - strandat 899.403 kb on - strandat 899.415 kb on + strandat 899.425 kb on + strandat 899.484 kb on + strandat 899.539 kb on + strand, within MIT1002_00814at 899.662 kb on - strand, within MIT1002_00814at 899.684 kb on - strand, within MIT1002_00814at 899.715 kb on - strand, within MIT1002_00814at 899.773 kb on - strand, within MIT1002_00814at 899.791 kb on + strand, within MIT1002_00814at 899.872 kb on - strand, within MIT1002_00814at 899.879 kb on + strand, within MIT1002_00814at 899.887 kb on - strand, within MIT1002_00814at 899.889 kb on + strand, within MIT1002_00814at 899.892 kb on + strand, within MIT1002_00814at 899.986 kb on + strand, within MIT1002_00814at 900.075 kb on + strandat 900.083 kb on - strandat 900.134 kb on - strandat 900.139 kb on - strandat 900.523 kb on - strand, within MIT1002_00815at 900.932 kb on - strand, within MIT1002_00815at 901.121 kb on + strand, within MIT1002_00815at 901.121 kb on + strand, within MIT1002_00815at 901.121 kb on + strand, within MIT1002_00815at 901.121 kb on + strand, within MIT1002_00815at 901.129 kb on - strand, within MIT1002_00815at 901.129 kb on - strand, within MIT1002_00815at 901.131 kb on + strand, within MIT1002_00815at 901.175 kb on - strand, within MIT1002_00815at 901.490 kb on - strand, within MIT1002_00816at 901.490 kb on - strand, within MIT1002_00816at 901.490 kb on - strand, within MIT1002_00816at 901.501 kb on + strand, within MIT1002_00816at 901.556 kb on + strand, within MIT1002_00816at 901.597 kb on - strand, within MIT1002_00816at 901.668 kb on + strand, within MIT1002_00816at 901.764 kb on + strand, within MIT1002_00816at 901.782 kb on - strand, within MIT1002_00816at 901.853 kb on - strand, within MIT1002_00816at 902.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
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899,115 - -1.7
899,134 - +0.3
899,153 + -0.1
899,153 + +1.1
899,207 + +2.7
899,232 - -1.7
899,344 - -2.0
899,388 - -3.8
899,403 - -1.7
899,415 + -2.0
899,425 + -2.7
899,484 + -1.7
899,539 + MIT1002_00814 0.12 -1.7
899,662 - MIT1002_00814 0.31 -0.6
899,684 - MIT1002_00814 0.35 -1.4
899,715 - MIT1002_00814 0.39 -0.7
899,773 - MIT1002_00814 0.49 -0.7
899,791 + MIT1002_00814 0.52 -4.2
899,872 - MIT1002_00814 0.64 +0.1
899,879 + MIT1002_00814 0.65 -1.5
899,887 - MIT1002_00814 0.67 -3.4
899,889 + MIT1002_00814 0.67 -1.0
899,892 + MIT1002_00814 0.67 -2.0
899,986 + MIT1002_00814 0.82 -2.5
900,075 + -0.5
900,083 - -1.0
900,134 - -1.7
900,139 - -3.0
900,523 - MIT1002_00815 0.33 -1.8
900,932 - MIT1002_00815 0.66 -3.0
901,121 + MIT1002_00815 0.81 -2.8
901,121 + MIT1002_00815 0.81 -0.7
901,121 + MIT1002_00815 0.81 -2.1
901,121 + MIT1002_00815 0.81 +0.5
901,129 - MIT1002_00815 0.81 -1.7
901,129 - MIT1002_00815 0.81 -2.5
901,131 + MIT1002_00815 0.82 -3.1
901,175 - MIT1002_00815 0.85 -2.0
901,490 - MIT1002_00816 0.18 -2.4
901,490 - MIT1002_00816 0.18 -2.1
901,490 - MIT1002_00816 0.18 -2.7
901,501 + MIT1002_00816 0.19 -1.5
901,556 + MIT1002_00816 0.27 -1.7
901,597 - MIT1002_00816 0.32 -1.7
901,668 + MIT1002_00816 0.42 -2.8
901,764 + MIT1002_00816 0.55 -2.8
901,782 - MIT1002_00816 0.57 -1.8
901,853 - MIT1002_00816 0.67 +0.5
902,044 - -3.7

Or see this region's nucleotide sequence