Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00709

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00707 and MIT1002_00708 are separated by 193 nucleotidesMIT1002_00708 and MIT1002_00709 are separated by 242 nucleotidesMIT1002_00709 and MIT1002_00710 are separated by 88 nucleotides MIT1002_00707: MIT1002_00707 - Chemotaxis regulator BdlA, at 774,369 to 775,685 _00707 MIT1002_00708: MIT1002_00708 - hypothetical protein, at 775,879 to 776,013 _00708 MIT1002_00709: MIT1002_00709 - Nitrate transport protein NrtA precursor, at 776,256 to 777,665 _00709 MIT1002_00710: MIT1002_00710 - Bicarbonate transport system permease protein CmpB, at 777,754 to 778,749 _00710 Position (kb) 776 777 778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 775.300 kb on + strand, within MIT1002_00707at 775.300 kb on + strand, within MIT1002_00707at 775.388 kb on + strand, within MIT1002_00707at 775.497 kb on - strand, within MIT1002_00707at 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.585 kb on + strandat 775.592 kb on - strandat 775.592 kb on - strandat 775.592 kb on - strandat 775.592 kb on - strandat 775.655 kb on - strandat 775.709 kb on + strandat 775.717 kb on - strandat 775.721 kb on + strandat 775.770 kb on - strandat 775.772 kb on - strandat 775.909 kb on + strand, within MIT1002_00708at 775.909 kb on + strand, within MIT1002_00708at 775.961 kb on - strand, within MIT1002_00708at 775.963 kb on - strand, within MIT1002_00708at 775.963 kb on - strand, within MIT1002_00708at 775.966 kb on + strand, within MIT1002_00708at 775.970 kb on - strand, within MIT1002_00708at 776.102 kb on + strandat 776.114 kb on - strandat 776.151 kb on - strandat 776.190 kb on + strandat 776.207 kb on + strandat 776.305 kb on + strandat 776.311 kb on + strandat 776.317 kb on + strandat 776.320 kb on - strandat 776.386 kb on + strandat 776.436 kb on + strand, within MIT1002_00709at 776.574 kb on + strand, within MIT1002_00709at 776.628 kb on - strand, within MIT1002_00709at 776.779 kb on + strand, within MIT1002_00709at 776.835 kb on - strand, within MIT1002_00709at 776.879 kb on - strand, within MIT1002_00709at 776.879 kb on - strand, within MIT1002_00709at 776.992 kb on + strand, within MIT1002_00709at 776.995 kb on - strand, within MIT1002_00709at 777.000 kb on - strand, within MIT1002_00709at 777.023 kb on + strand, within MIT1002_00709at 777.030 kb on + strand, within MIT1002_00709at 777.031 kb on + strand, within MIT1002_00709at 777.031 kb on - strand, within MIT1002_00709at 777.039 kb on - strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.134 kb on + strand, within MIT1002_00709at 777.143 kb on + strand, within MIT1002_00709at 777.143 kb on + strand, within MIT1002_00709at 777.233 kb on + strand, within MIT1002_00709at 777.233 kb on + strand, within MIT1002_00709at 777.241 kb on - strand, within MIT1002_00709at 777.261 kb on + strand, within MIT1002_00709at 777.304 kb on + strand, within MIT1002_00709at 777.484 kb on + strand, within MIT1002_00709at 777.520 kb on - strand, within MIT1002_00709at 777.608 kb on + strandat 777.608 kb on + strandat 777.647 kb on - strandat 777.652 kb on + strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.717 kb on - strandat 777.717 kb on - strandat 777.717 kb on - strandat 777.740 kb on - strandat 777.762 kb on + strandat 777.775 kb on - strandat 777.831 kb on + strandat 777.839 kb on - strandat 777.854 kb on - strand, within MIT1002_00710at 777.856 kb on + strand, within MIT1002_00710at 777.873 kb on + strand, within MIT1002_00710at 777.916 kb on + strand, within MIT1002_00710at 777.955 kb on - strand, within MIT1002_00710at 777.957 kb on + strand, within MIT1002_00710at 777.980 kb on + strand, within MIT1002_00710at 778.089 kb on - strand, within MIT1002_00710at 778.123 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.131 kb on - strand, within MIT1002_00710at 778.373 kb on + strand, within MIT1002_00710at 778.428 kb on - strand, within MIT1002_00710at 778.450 kb on + strand, within MIT1002_00710at 778.457 kb on - strand, within MIT1002_00710at 778.457 kb on - strand, within MIT1002_00710at 778.541 kb on + strand, within MIT1002_00710at 778.571 kb on + strand, within MIT1002_00710at 778.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
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775,300 + MIT1002_00707 0.71 +0.1
775,300 + MIT1002_00707 0.71 -0.6
775,388 + MIT1002_00707 0.77 +1.3
775,497 - MIT1002_00707 0.86 +0.8
775,584 + -1.6
775,584 + +0.4
775,584 + +0.9
775,584 + +0.1
775,584 + +0.0
775,584 + +0.4
775,585 + -0.1
775,592 - -0.3
775,592 - +0.1
775,592 - -0.1
775,592 - -0.3
775,655 - -0.5
775,709 + +0.3
775,717 - -0.9
775,721 + +0.6
775,770 - +0.8
775,772 - +0.8
775,909 + MIT1002_00708 0.22 +0.7
775,909 + MIT1002_00708 0.22 -0.5
775,961 - MIT1002_00708 0.61 +0.7
775,963 - MIT1002_00708 0.62 +1.2
775,963 - MIT1002_00708 0.62 +1.0
775,966 + MIT1002_00708 0.64 +0.1
775,970 - MIT1002_00708 0.67 +0.4
776,102 + +0.5
776,114 - +0.7
776,151 - +0.7
776,190 + +0.6
776,207 + +1.7
776,305 + -1.0
776,311 + -0.5
776,317 + +0.5
776,320 - +0.2
776,386 + -2.3
776,436 + MIT1002_00709 0.13 -0.7
776,574 + MIT1002_00709 0.23 +1.6
776,628 - MIT1002_00709 0.26 +0.4
776,779 + MIT1002_00709 0.37 +0.4
776,835 - MIT1002_00709 0.41 +1.1
776,879 - MIT1002_00709 0.44 -0.0
776,879 - MIT1002_00709 0.44 +0.9
776,992 + MIT1002_00709 0.52 +0.3
776,995 - MIT1002_00709 0.52 -0.0
777,000 - MIT1002_00709 0.53 -1.0
777,023 + MIT1002_00709 0.54 +0.9
777,030 + MIT1002_00709 0.55 +0.8
777,031 + MIT1002_00709 0.55 -0.9
777,031 - MIT1002_00709 0.55 -0.6
777,039 - MIT1002_00709 0.56 +2.7
777,099 + MIT1002_00709 0.60 +0.6
777,099 + MIT1002_00709 0.60 +1.4
777,099 + MIT1002_00709 0.60 +0.1
777,099 + MIT1002_00709 0.60 +1.3
777,099 + MIT1002_00709 0.60 -0.6
777,107 - MIT1002_00709 0.60 -1.5
777,107 - MIT1002_00709 0.60 -2.1
777,107 - MIT1002_00709 0.60 -0.7
777,107 - MIT1002_00709 0.60 +0.8
777,107 - MIT1002_00709 0.60 -0.3
777,107 - MIT1002_00709 0.60 +2.4
777,107 - MIT1002_00709 0.60 +1.1
777,107 - MIT1002_00709 0.60 +0.1
777,134 + MIT1002_00709 0.62 +0.0
777,143 + MIT1002_00709 0.63 +0.2
777,143 + MIT1002_00709 0.63 +1.5
777,233 + MIT1002_00709 0.69 -1.8
777,233 + MIT1002_00709 0.69 +0.2
777,241 - MIT1002_00709 0.70 +1.4
777,261 + MIT1002_00709 0.71 -0.8
777,304 + MIT1002_00709 0.74 +0.6
777,484 + MIT1002_00709 0.87 +0.7
777,520 - MIT1002_00709 0.90 -0.9
777,608 + +1.6
777,608 + +0.2
777,647 - -1.1
777,652 + +1.0
777,701 - -2.7
777,701 - +0.8
777,701 - +1.4
777,701 - -0.1
777,701 - -2.3
777,701 - -1.6
777,717 - -0.8
777,717 - +0.7
777,717 - -0.0
777,740 - +1.2
777,762 + -0.1
777,775 - +0.4
777,831 + -1.1
777,839 - +0.0
777,854 - MIT1002_00710 0.10 +1.6
777,856 + MIT1002_00710 0.10 -0.7
777,873 + MIT1002_00710 0.12 +2.4
777,916 + MIT1002_00710 0.16 +0.2
777,955 - MIT1002_00710 0.20 -0.6
777,957 + MIT1002_00710 0.20 -2.5
777,980 + MIT1002_00710 0.23 +0.1
778,089 - MIT1002_00710 0.34 +1.0
778,123 + MIT1002_00710 0.37 +0.0
778,125 + MIT1002_00710 0.37 -1.0
778,125 + MIT1002_00710 0.37 -0.5
778,125 + MIT1002_00710 0.37 -0.7
778,131 - MIT1002_00710 0.38 +1.4
778,373 + MIT1002_00710 0.62 +0.8
778,428 - MIT1002_00710 0.68 +1.6
778,450 + MIT1002_00710 0.70 -0.3
778,457 - MIT1002_00710 0.71 -0.1
778,457 - MIT1002_00710 0.71 +0.2
778,541 + MIT1002_00710 0.79 +0.5
778,571 + MIT1002_00710 0.82 +1.5
778,654 - -3.2

Or see this region's nucleotide sequence