Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00670

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00668 and MIT1002_00669 are separated by 210 nucleotidesMIT1002_00669 and MIT1002_00670 are separated by 139 nucleotidesMIT1002_00670 and MIT1002_00671 are separated by 295 nucleotidesMIT1002_00671 and MIT1002_00672 overlap by 52 nucleotides MIT1002_00668: MIT1002_00668 - Ion transport protein, at 732,828 to 733,682 _00668 MIT1002_00669: MIT1002_00669 - hypothetical protein, at 733,893 to 734,051 _00669 MIT1002_00670: MIT1002_00670 - Outer membrane protein TolC precursor, at 734,191 to 735,564 _00670 MIT1002_00671: MIT1002_00671 - ADP-ribose pyrophosphatase, at 735,860 to 736,486 _00671 MIT1002_00672: MIT1002_00672 - putative dehydrogenase, at 736,435 to 736,923 _00672 Position (kb) 734 735 736Strain fitness (log2 ratio) -2 -1 0 1at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.282 kb on + strand, within MIT1002_00668at 733.290 kb on - strand, within MIT1002_00668at 733.290 kb on - strand, within MIT1002_00668at 733.379 kb on + strand, within MIT1002_00668at 733.393 kb on + strand, within MIT1002_00668at 733.496 kb on - strand, within MIT1002_00668at 733.498 kb on + strand, within MIT1002_00668at 733.506 kb on - strand, within MIT1002_00668at 733.629 kb on - strandat 733.667 kb on + strandat 733.690 kb on - strandat 733.721 kb on + strandat 733.938 kb on + strand, within MIT1002_00669at 733.941 kb on - strand, within MIT1002_00669at 733.946 kb on - strand, within MIT1002_00669at 734.056 kb on + strandat 734.077 kb on + strandat 734.079 kb on + strandat 734.128 kb on + strandat 734.133 kb on + strandat 734.183 kb on + strandat 734.310 kb on - strandat 734.351 kb on - strand, within MIT1002_00670at 734.353 kb on + strand, within MIT1002_00670at 734.375 kb on - strand, within MIT1002_00670at 734.800 kb on + strand, within MIT1002_00670at 734.835 kb on - strand, within MIT1002_00670at 734.988 kb on - strand, within MIT1002_00670at 735.030 kb on + strand, within MIT1002_00670at 735.394 kb on - strand, within MIT1002_00670at 735.614 kb on - strandat 735.627 kb on + strandat 735.795 kb on + strandat 735.822 kb on + strandat 735.910 kb on + strandat 735.910 kb on + strandat 735.910 kb on + strandat 735.918 kb on - strandat 735.918 kb on - strandat 735.993 kb on - strand, within MIT1002_00671at 736.020 kb on + strand, within MIT1002_00671at 736.020 kb on + strand, within MIT1002_00671at 736.094 kb on - strand, within MIT1002_00671at 736.139 kb on + strand, within MIT1002_00671at 736.161 kb on + strand, within MIT1002_00671at 736.176 kb on + strand, within MIT1002_00671at 736.177 kb on - strand, within MIT1002_00671at 736.186 kb on + strand, within MIT1002_00671at 736.186 kb on - strand, within MIT1002_00671at 736.198 kb on + strand, within MIT1002_00671at 736.237 kb on + strand, within MIT1002_00671at 736.299 kb on - strand, within MIT1002_00671at 736.321 kb on - strand, within MIT1002_00671at 736.367 kb on - strand, within MIT1002_00671at 736.421 kb on - strand, within MIT1002_00671at 736.469 kb on - strandat 736.471 kb on + strandat 736.497 kb on - strand, within MIT1002_00672at 736.553 kb on + strand, within MIT1002_00672at 736.556 kb on - strand, within MIT1002_00672at 736.561 kb on - strand, within MIT1002_00672

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
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733,215 + MIT1002_00668 0.45 +1.2
733,215 + MIT1002_00668 0.45 +0.3
733,215 + MIT1002_00668 0.45 +0.6
733,215 + MIT1002_00668 0.45 +0.8
733,215 + MIT1002_00668 0.45 -2.2
733,223 - MIT1002_00668 0.46 +1.0
733,223 - MIT1002_00668 0.46 -0.5
733,223 - MIT1002_00668 0.46 +0.1
733,223 - MIT1002_00668 0.46 +0.4
733,223 - MIT1002_00668 0.46 -0.9
733,223 - MIT1002_00668 0.46 -0.9
733,282 + MIT1002_00668 0.53 -0.0
733,290 - MIT1002_00668 0.54 +0.8
733,290 - MIT1002_00668 0.54 -2.4
733,379 + MIT1002_00668 0.64 -0.6
733,393 + MIT1002_00668 0.66 +0.8
733,496 - MIT1002_00668 0.78 +0.4
733,498 + MIT1002_00668 0.78 -0.2
733,506 - MIT1002_00668 0.79 +0.0
733,629 - -0.2
733,667 + +0.8
733,690 - +0.4
733,721 + +0.1
733,938 + MIT1002_00669 0.28 +0.3
733,941 - MIT1002_00669 0.30 +1.4
733,946 - MIT1002_00669 0.33 +0.4
734,056 + +0.1
734,077 + +0.1
734,079 + -0.6
734,128 + +0.4
734,133 + +0.4
734,183 + +1.1
734,310 - -0.6
734,351 - MIT1002_00670 0.12 -2.3
734,353 + MIT1002_00670 0.12 -1.0
734,375 - MIT1002_00670 0.13 -0.6
734,800 + MIT1002_00670 0.44 -1.2
734,835 - MIT1002_00670 0.47 -0.6
734,988 - MIT1002_00670 0.58 -1.2
735,030 + MIT1002_00670 0.61 -0.6
735,394 - MIT1002_00670 0.88 -0.6
735,614 - -2.5
735,627 + +0.1
735,795 + -0.1
735,822 + +1.3
735,910 + +1.4
735,910 + -0.3
735,910 + +1.1
735,918 - -1.8
735,918 - +0.3
735,993 - MIT1002_00671 0.21 +0.9
736,020 + MIT1002_00671 0.26 +0.2
736,020 + MIT1002_00671 0.26 -0.2
736,094 - MIT1002_00671 0.37 +0.9
736,139 + MIT1002_00671 0.44 -0.3
736,161 + MIT1002_00671 0.48 -1.9
736,176 + MIT1002_00671 0.50 +0.0
736,177 - MIT1002_00671 0.51 +0.6
736,186 + MIT1002_00671 0.52 -0.5
736,186 - MIT1002_00671 0.52 -0.9
736,198 + MIT1002_00671 0.54 +1.4
736,237 + MIT1002_00671 0.60 +0.4
736,299 - MIT1002_00671 0.70 +0.7
736,321 - MIT1002_00671 0.74 -1.4
736,367 - MIT1002_00671 0.81 -0.3
736,421 - MIT1002_00671 0.89 +0.0
736,469 - -0.2
736,471 + +0.7
736,497 - MIT1002_00672 0.13 -0.7
736,553 + MIT1002_00672 0.24 +0.1
736,556 - MIT1002_00672 0.25 -0.4
736,561 - MIT1002_00672 0.26 +0.4

Or see this region's nucleotide sequence