Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00639 and MIT1002_00640 overlap by 11 nucleotides MIT1002_00640 and MIT1002_00641 overlap by 29 nucleotides MIT1002_00641 and MIT1002_00642 overlap by 7 nucleotides
MIT1002_00639: MIT1002_00639 - putative efflux pump membrane fusion protein, at 691,058 to 692,536
_00639
MIT1002_00640: MIT1002_00640 - putative efflux pump membrane transporter TtgB, at 692,526 to 695,753
_00640
MIT1002_00641: MIT1002_00641 - Transcriptional regulatory protein QseB, at 695,725 to 696,465
_00641
MIT1002_00642: MIT1002_00642 - Sensor protein BasS, at 696,459 to 697,808
_00642
Position (kb) 692
693
694
695
696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 691.560 kb on + strand, within MIT1002_00639 at 691.560 kb on + strand, within MIT1002_00639 at 691.560 kb on + strand, within MIT1002_00639 at 691.594 kb on - strand, within MIT1002_00639 at 691.604 kb on - strand, within MIT1002_00639 at 691.619 kb on + strand, within MIT1002_00639 at 691.661 kb on - strand, within MIT1002_00639 at 691.680 kb on + strand, within MIT1002_00639 at 691.687 kb on - strand, within MIT1002_00639 at 691.688 kb on - strand, within MIT1002_00639 at 691.688 kb on - strand, within MIT1002_00639 at 691.695 kb on - strand, within MIT1002_00639 at 691.733 kb on - strand, within MIT1002_00639 at 691.740 kb on - strand, within MIT1002_00639 at 691.750 kb on - strand, within MIT1002_00639 at 691.760 kb on - strand, within MIT1002_00639 at 691.769 kb on - strand, within MIT1002_00639 at 691.830 kb on + strand, within MIT1002_00639 at 691.835 kb on + strand, within MIT1002_00639 at 691.907 kb on - strand, within MIT1002_00639 at 691.942 kb on - strand, within MIT1002_00639 at 691.948 kb on - strand, within MIT1002_00639 at 691.960 kb on - strand, within MIT1002_00639 at 691.960 kb on - strand, within MIT1002_00639 at 691.976 kb on + strand, within MIT1002_00639 at 692.077 kb on + strand, within MIT1002_00639 at 692.085 kb on - strand, within MIT1002_00639 at 692.165 kb on - strand, within MIT1002_00639 at 692.239 kb on + strand, within MIT1002_00639 at 692.267 kb on - strand, within MIT1002_00639 at 692.309 kb on + strand, within MIT1002_00639 at 692.309 kb on + strand, within MIT1002_00639 at 692.317 kb on - strand, within MIT1002_00639 at 692.409 kb on + strand at 692.409 kb on + strand at 692.417 kb on - strand at 692.446 kb on - strand at 692.466 kb on + strand at 692.478 kb on + strand at 692.494 kb on - strand at 692.504 kb on + strand at 692.516 kb on + strand at 692.625 kb on + strand at 692.630 kb on + strand at 692.630 kb on + strand at 692.630 kb on + strand at 692.632 kb on + strand at 692.638 kb on - strand at 692.638 kb on - strand at 692.662 kb on + strand at 692.670 kb on - strand at 692.670 kb on - strand at 692.670 kb on - strand at 692.670 kb on - strand at 692.768 kb on + strand at 692.853 kb on - strand, within MIT1002_00640 at 692.902 kb on + strand, within MIT1002_00640 at 692.910 kb on - strand, within MIT1002_00640 at 692.910 kb on - strand, within MIT1002_00640 at 692.979 kb on + strand, within MIT1002_00640 at 693.010 kb on + strand, within MIT1002_00640 at 693.023 kb on + strand, within MIT1002_00640 at 693.023 kb on + strand, within MIT1002_00640 at 693.279 kb on - strand, within MIT1002_00640 at 693.280 kb on + strand, within MIT1002_00640 at 693.288 kb on - strand, within MIT1002_00640 at 693.288 kb on - strand, within MIT1002_00640 at 693.290 kb on + strand, within MIT1002_00640 at 693.290 kb on + strand, within MIT1002_00640 at 693.290 kb on + strand, within MIT1002_00640 at 693.298 kb on + strand, within MIT1002_00640 at 693.298 kb on - strand, within MIT1002_00640 at 693.298 kb on - strand, within MIT1002_00640 at 693.298 kb on - strand, within MIT1002_00640 at 693.298 kb on - strand, within MIT1002_00640 at 693.298 kb on - strand, within MIT1002_00640 at 693.422 kb on - strand, within MIT1002_00640 at 693.597 kb on + strand, within MIT1002_00640 at 693.696 kb on + strand, within MIT1002_00640 at 693.698 kb on - strand, within MIT1002_00640 at 693.715 kb on - strand, within MIT1002_00640 at 693.808 kb on + strand, within MIT1002_00640 at 693.849 kb on - strand, within MIT1002_00640 at 693.856 kb on + strand, within MIT1002_00640 at 693.894 kb on - strand, within MIT1002_00640 at 693.901 kb on + strand, within MIT1002_00640 at 693.911 kb on + strand, within MIT1002_00640 at 693.920 kb on + strand, within MIT1002_00640 at 693.997 kb on - strand, within MIT1002_00640 at 694.002 kb on - strand, within MIT1002_00640 at 694.043 kb on + strand, within MIT1002_00640 at 694.056 kb on + strand, within MIT1002_00640 at 694.064 kb on - strand, within MIT1002_00640 at 694.095 kb on + strand, within MIT1002_00640 at 694.115 kb on - strand, within MIT1002_00640 at 694.127 kb on - strand, within MIT1002_00640 at 694.150 kb on + strand, within MIT1002_00640 at 694.204 kb on - strand, within MIT1002_00640 at 694.209 kb on + strand, within MIT1002_00640 at 694.212 kb on + strand, within MIT1002_00640 at 694.212 kb on + strand, within MIT1002_00640 at 694.242 kb on + strand, within MIT1002_00640 at 694.252 kb on - strand, within MIT1002_00640 at 694.256 kb on + strand, within MIT1002_00640 at 694.273 kb on + strand, within MIT1002_00640 at 694.342 kb on + strand, within MIT1002_00640 at 694.342 kb on + strand, within MIT1002_00640 at 694.350 kb on - strand, within MIT1002_00640 at 694.350 kb on - strand, within MIT1002_00640 at 694.428 kb on + strand, within MIT1002_00640 at 694.436 kb on - strand, within MIT1002_00640 at 694.436 kb on - strand, within MIT1002_00640 at 694.447 kb on - strand, within MIT1002_00640 at 694.508 kb on - strand, within MIT1002_00640 at 694.508 kb on - strand, within MIT1002_00640 at 694.615 kb on + strand, within MIT1002_00640 at 694.748 kb on - strand, within MIT1002_00640 at 694.750 kb on + strand, within MIT1002_00640 at 694.758 kb on - strand, within MIT1002_00640 at 694.806 kb on - strand, within MIT1002_00640 at 694.883 kb on + strand, within MIT1002_00640 at 694.891 kb on - strand, within MIT1002_00640 at 694.939 kb on + strand, within MIT1002_00640 at 694.954 kb on + strand, within MIT1002_00640 at 694.962 kb on - strand, within MIT1002_00640 at 695.035 kb on + strand, within MIT1002_00640 at 695.035 kb on + strand, within MIT1002_00640 at 695.041 kb on + strand, within MIT1002_00640 at 695.043 kb on - strand, within MIT1002_00640 at 695.043 kb on - strand, within MIT1002_00640 at 695.043 kb on - strand, within MIT1002_00640 at 695.043 kb on - strand, within MIT1002_00640 at 695.043 kb on - strand, within MIT1002_00640 at 695.077 kb on + strand, within MIT1002_00640 at 695.085 kb on - strand, within MIT1002_00640 at 695.191 kb on + strand, within MIT1002_00640 at 695.191 kb on + strand, within MIT1002_00640 at 695.191 kb on + strand, within MIT1002_00640 at 695.191 kb on + strand, within MIT1002_00640 at 695.196 kb on + strand, within MIT1002_00640 at 695.199 kb on - strand, within MIT1002_00640 at 695.199 kb on - strand, within MIT1002_00640 at 695.199 kb on - strand, within MIT1002_00640 at 695.199 kb on - strand, within MIT1002_00640 at 695.263 kb on + strand, within MIT1002_00640 at 695.306 kb on + strand, within MIT1002_00640 at 695.314 kb on - strand, within MIT1002_00640 at 695.314 kb on - strand, within MIT1002_00640 at 695.379 kb on - strand, within MIT1002_00640 at 695.386 kb on + strand, within MIT1002_00640 at 695.386 kb on + strand, within MIT1002_00640 at 695.386 kb on + strand, within MIT1002_00640 at 695.386 kb on + strand, within MIT1002_00640 at 695.386 kb on + strand, within MIT1002_00640 at 695.394 kb on - strand, within MIT1002_00640 at 695.394 kb on - strand, within MIT1002_00640 at 695.402 kb on - strand, within MIT1002_00640 at 695.423 kb on + strand, within MIT1002_00640 at 695.431 kb on - strand at 695.431 kb on - strand at 695.549 kb on - strand at 695.667 kb on + strand at 695.714 kb on + strand at 695.751 kb on + strand at 695.833 kb on - strand, within MIT1002_00641 at 695.840 kb on + strand, within MIT1002_00641 at 695.840 kb on + strand, within MIT1002_00641 at 695.840 kb on + strand, within MIT1002_00641 at 695.903 kb on + strand, within MIT1002_00641 at 695.903 kb on + strand, within MIT1002_00641 at 695.911 kb on - strand, within MIT1002_00641 at 695.932 kb on + strand, within MIT1002_00641 at 695.942 kb on - strand, within MIT1002_00641 at 695.966 kb on + strand, within MIT1002_00641 at 695.966 kb on + strand, within MIT1002_00641 at 696.195 kb on + strand, within MIT1002_00641 at 696.195 kb on + strand, within MIT1002_00641 at 696.195 kb on + strand, within MIT1002_00641 at 696.203 kb on - strand, within MIT1002_00641 at 696.203 kb on - strand, within MIT1002_00641 at 696.263 kb on - strand, within MIT1002_00641 at 696.287 kb on - strand, within MIT1002_00641 at 696.319 kb on + strand, within MIT1002_00641 at 696.356 kb on - strand, within MIT1002_00641 at 696.384 kb on + strand, within MIT1002_00641 at 696.392 kb on - strand at 696.399 kb on + strand at 696.399 kb on + strand at 696.416 kb on + strand at 696.419 kb on - strand at 696.469 kb on - strand at 696.489 kb on - strand at 696.496 kb on + strand at 696.515 kb on - strand at 696.541 kb on + strand at 696.547 kb on - strand at 696.554 kb on - strand at 696.581 kb on - strand at 696.707 kb on - strand, within MIT1002_00642 at 696.725 kb on + strand, within MIT1002_00642 at 696.732 kb on - strand, within MIT1002_00642 at 696.732 kb on - strand, within MIT1002_00642 at 696.732 kb on - strand, within MIT1002_00642 at 696.732 kb on - strand, within MIT1002_00642 at 696.742 kb on - strand, within MIT1002_00642
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 691,560 + MIT1002_00639 0.34 -0.1 691,560 + MIT1002_00639 0.34 -0.2 691,560 + MIT1002_00639 0.34 +2.0 691,594 - MIT1002_00639 0.36 -0.1 691,604 - MIT1002_00639 0.37 +0.4 691,619 + MIT1002_00639 0.38 -0.1 691,661 - MIT1002_00639 0.41 +0.7 691,680 + MIT1002_00639 0.42 +0.1 691,687 - MIT1002_00639 0.43 +0.8 691,688 - MIT1002_00639 0.43 -0.4 691,688 - MIT1002_00639 0.43 -0.4 691,695 - MIT1002_00639 0.43 -0.3 691,733 - MIT1002_00639 0.46 -0.2 691,740 - MIT1002_00639 0.46 -0.7 691,750 - MIT1002_00639 0.47 +0.9 691,760 - MIT1002_00639 0.47 +0.2 691,769 - MIT1002_00639 0.48 +0.1 691,830 + MIT1002_00639 0.52 -1.4 691,835 + MIT1002_00639 0.53 -1.4 691,907 - MIT1002_00639 0.57 -1.2 691,942 - MIT1002_00639 0.60 +3.2 691,948 - MIT1002_00639 0.60 -0.9 691,960 - MIT1002_00639 0.61 -0.8 691,960 - MIT1002_00639 0.61 +1.5 691,976 + MIT1002_00639 0.62 +0.0 692,077 + MIT1002_00639 0.69 +0.8 692,085 - MIT1002_00639 0.69 -0.6 692,165 - MIT1002_00639 0.75 -0.2 692,239 + MIT1002_00639 0.80 +0.6 692,267 - MIT1002_00639 0.82 -0.7 692,309 + MIT1002_00639 0.85 -1.4 692,309 + MIT1002_00639 0.85 -0.1 692,317 - MIT1002_00639 0.85 -0.1 692,409 + +1.2 692,409 + +2.3 692,417 - +1.2 692,446 - +0.2 692,466 + +0.7 692,478 + -0.1 692,494 - -0.4 692,504 + -0.3 692,516 + +1.1 692,625 + -1.9 692,630 + +1.4 692,630 + +1.1 692,630 + +1.1 692,632 + -0.0 692,638 - -0.2 692,638 - +0.9 692,662 + +0.7 692,670 - -0.3 692,670 - -1.4 692,670 - -0.1 692,670 - -0.1 692,768 + +0.8 692,853 - MIT1002_00640 0.10 -0.2 692,902 + MIT1002_00640 0.12 -1.8 692,910 - MIT1002_00640 0.12 +0.6 692,910 - MIT1002_00640 0.12 +0.6 692,979 + MIT1002_00640 0.14 -0.0 693,010 + MIT1002_00640 0.15 -0.8 693,023 + MIT1002_00640 0.15 -0.8 693,023 + MIT1002_00640 0.15 -0.3 693,279 - MIT1002_00640 0.23 +0.3 693,280 + MIT1002_00640 0.23 +1.2 693,288 - MIT1002_00640 0.24 +0.2 693,288 - MIT1002_00640 0.24 -0.4 693,290 + MIT1002_00640 0.24 -1.2 693,290 + MIT1002_00640 0.24 -0.3 693,290 + MIT1002_00640 0.24 +0.6 693,298 + MIT1002_00640 0.24 -0.0 693,298 - MIT1002_00640 0.24 +0.3 693,298 - MIT1002_00640 0.24 -2.2 693,298 - MIT1002_00640 0.24 -0.6 693,298 - MIT1002_00640 0.24 +0.0 693,298 - MIT1002_00640 0.24 -0.3 693,422 - MIT1002_00640 0.28 +0.2 693,597 + MIT1002_00640 0.33 +0.3 693,696 + MIT1002_00640 0.36 -1.2 693,698 - MIT1002_00640 0.36 +1.3 693,715 - MIT1002_00640 0.37 +1.5 693,808 + MIT1002_00640 0.40 -0.7 693,849 - MIT1002_00640 0.41 -1.1 693,856 + MIT1002_00640 0.41 -0.2 693,894 - MIT1002_00640 0.42 -0.9 693,901 + MIT1002_00640 0.43 -0.8 693,911 + MIT1002_00640 0.43 -0.1 693,920 + MIT1002_00640 0.43 -1.4 693,997 - MIT1002_00640 0.46 +0.2 694,002 - MIT1002_00640 0.46 +0.5 694,043 + MIT1002_00640 0.47 -0.1 694,056 + MIT1002_00640 0.47 -0.5 694,064 - MIT1002_00640 0.48 -1.8 694,095 + MIT1002_00640 0.49 +2.5 694,115 - MIT1002_00640 0.49 +0.3 694,127 - MIT1002_00640 0.50 +0.0 694,150 + MIT1002_00640 0.50 +0.6 694,204 - MIT1002_00640 0.52 -1.1 694,209 + MIT1002_00640 0.52 +1.2 694,212 + MIT1002_00640 0.52 +0.7 694,212 + MIT1002_00640 0.52 +0.8 694,242 + MIT1002_00640 0.53 +1.4 694,252 - MIT1002_00640 0.53 -0.6 694,256 + MIT1002_00640 0.54 -2.1 694,273 + MIT1002_00640 0.54 +0.2 694,342 + MIT1002_00640 0.56 +0.7 694,342 + MIT1002_00640 0.56 +0.2 694,350 - MIT1002_00640 0.57 -1.7 694,350 - MIT1002_00640 0.57 -0.4 694,428 + MIT1002_00640 0.59 -0.1 694,436 - MIT1002_00640 0.59 -0.6 694,436 - MIT1002_00640 0.59 -1.2 694,447 - MIT1002_00640 0.60 +0.6 694,508 - MIT1002_00640 0.61 -3.0 694,508 - MIT1002_00640 0.61 +0.6 694,615 + MIT1002_00640 0.65 +0.4 694,748 - MIT1002_00640 0.69 +0.4 694,750 + MIT1002_00640 0.69 -0.8 694,758 - MIT1002_00640 0.69 -1.5 694,806 - MIT1002_00640 0.71 -2.1 694,883 + MIT1002_00640 0.73 -0.2 694,891 - MIT1002_00640 0.73 -0.4 694,939 + MIT1002_00640 0.75 +1.4 694,954 + MIT1002_00640 0.75 +0.6 694,962 - MIT1002_00640 0.75 +2.0 695,035 + MIT1002_00640 0.78 +1.0 695,035 + MIT1002_00640 0.78 -0.5 695,041 + MIT1002_00640 0.78 +0.1 695,043 - MIT1002_00640 0.78 -1.9 695,043 - MIT1002_00640 0.78 -1.3 695,043 - MIT1002_00640 0.78 +1.1 695,043 - MIT1002_00640 0.78 +1.2 695,043 - MIT1002_00640 0.78 -0.2 695,077 + MIT1002_00640 0.79 +0.7 695,085 - MIT1002_00640 0.79 +0.7 695,191 + MIT1002_00640 0.83 +0.5 695,191 + MIT1002_00640 0.83 -0.1 695,191 + MIT1002_00640 0.83 +0.5 695,191 + MIT1002_00640 0.83 -0.2 695,196 + MIT1002_00640 0.83 -1.7 695,199 - MIT1002_00640 0.83 +0.6 695,199 - MIT1002_00640 0.83 +0.2 695,199 - MIT1002_00640 0.83 -1.9 695,199 - MIT1002_00640 0.83 +0.2 695,263 + MIT1002_00640 0.85 +1.2 695,306 + MIT1002_00640 0.86 +2.0 695,314 - MIT1002_00640 0.86 +0.1 695,314 - MIT1002_00640 0.86 +0.2 695,379 - MIT1002_00640 0.88 -0.6 695,386 + MIT1002_00640 0.89 -1.2 695,386 + MIT1002_00640 0.89 +0.4 695,386 + MIT1002_00640 0.89 +0.2 695,386 + MIT1002_00640 0.89 +0.3 695,386 + MIT1002_00640 0.89 +0.2 695,394 - MIT1002_00640 0.89 -0.1 695,394 - MIT1002_00640 0.89 +0.9 695,402 - MIT1002_00640 0.89 +0.6 695,423 + MIT1002_00640 0.90 -1.6 695,431 - +0.4 695,431 - -0.4 695,549 - -3.2 695,667 + -2.7 695,714 + -2.1 695,751 + -0.2 695,833 - MIT1002_00641 0.15 +0.6 695,840 + MIT1002_00641 0.16 -0.2 695,840 + MIT1002_00641 0.16 -0.4 695,840 + MIT1002_00641 0.16 -0.4 695,903 + MIT1002_00641 0.24 -1.2 695,903 + MIT1002_00641 0.24 -0.8 695,911 - MIT1002_00641 0.25 -0.1 695,932 + MIT1002_00641 0.28 +0.1 695,942 - MIT1002_00641 0.29 +0.5 695,966 + MIT1002_00641 0.33 -0.4 695,966 + MIT1002_00641 0.33 +0.0 696,195 + MIT1002_00641 0.63 +0.3 696,195 + MIT1002_00641 0.63 -1.6 696,195 + MIT1002_00641 0.63 -0.0 696,203 - MIT1002_00641 0.65 +0.5 696,203 - MIT1002_00641 0.65 +0.6 696,263 - MIT1002_00641 0.73 -3.8 696,287 - MIT1002_00641 0.76 -1.0 696,319 + MIT1002_00641 0.80 +0.1 696,356 - MIT1002_00641 0.85 -0.1 696,384 + MIT1002_00641 0.89 -0.5 696,392 - -0.4 696,399 + +0.3 696,399 + +0.5 696,416 + -2.4 696,419 - -0.4 696,469 - +0.4 696,489 - +0.9 696,496 + -0.1 696,515 - +0.5 696,541 + -0.7 696,547 - -0.3 696,554 - +1.5 696,581 - +0.5 696,707 - MIT1002_00642 0.18 +0.4 696,725 + MIT1002_00642 0.20 +0.5 696,732 - MIT1002_00642 0.20 -0.9 696,732 - MIT1002_00642 0.20 -0.0 696,732 - MIT1002_00642 0.20 -0.2 696,732 - MIT1002_00642 0.20 +1.0 696,742 - MIT1002_00642 0.21 -0.9
Or see this region's nucleotide sequence