Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00552

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00551 and MIT1002_00552 are separated by 147 nucleotidesMIT1002_00552 and MIT1002_00553 are separated by 9 nucleotides MIT1002_00551: MIT1002_00551 - Mn2+ and Fe2+ transporters of the NRAMP family protein, at 599,945 to 601,216 _00551 MIT1002_00552: MIT1002_00552 - hypothetical protein, at 601,364 to 601,834 _00552 MIT1002_00553: MIT1002_00553 - Serine hydroxymethyltransferase 2, at 601,844 to 603,100 _00553 Position (kb) 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 600.397 kb on - strand, within MIT1002_00551at 600.418 kb on - strand, within MIT1002_00551at 600.418 kb on - strand, within MIT1002_00551at 600.432 kb on - strand, within MIT1002_00551at 600.486 kb on + strand, within MIT1002_00551at 600.502 kb on + strand, within MIT1002_00551at 600.516 kb on - strand, within MIT1002_00551at 600.610 kb on + strand, within MIT1002_00551at 600.617 kb on + strand, within MIT1002_00551at 600.636 kb on + strand, within MIT1002_00551at 600.636 kb on + strand, within MIT1002_00551at 600.644 kb on - strand, within MIT1002_00551at 600.671 kb on - strand, within MIT1002_00551at 600.732 kb on + strand, within MIT1002_00551at 600.740 kb on - strand, within MIT1002_00551at 600.740 kb on - strand, within MIT1002_00551at 600.745 kb on - strand, within MIT1002_00551at 600.783 kb on - strand, within MIT1002_00551at 600.787 kb on - strand, within MIT1002_00551at 600.795 kb on + strand, within MIT1002_00551at 600.795 kb on + strand, within MIT1002_00551at 600.795 kb on + strand, within MIT1002_00551at 600.795 kb on + strand, within MIT1002_00551at 600.829 kb on + strand, within MIT1002_00551at 600.883 kb on - strand, within MIT1002_00551at 600.894 kb on - strand, within MIT1002_00551at 600.911 kb on + strand, within MIT1002_00551at 600.956 kb on + strand, within MIT1002_00551at 600.964 kb on + strand, within MIT1002_00551at 600.964 kb on + strand, within MIT1002_00551at 600.972 kb on - strand, within MIT1002_00551at 601.008 kb on - strand, within MIT1002_00551at 601.045 kb on + strand, within MIT1002_00551at 601.066 kb on - strand, within MIT1002_00551at 601.073 kb on + strand, within MIT1002_00551at 601.080 kb on + strand, within MIT1002_00551at 601.152 kb on + strandat 601.204 kb on - strandat 601.264 kb on + strandat 601.301 kb on + strandat 601.314 kb on + strandat 601.329 kb on + strandat 601.332 kb on - strandat 601.345 kb on + strandat 601.355 kb on + strandat 601.416 kb on - strand, within MIT1002_00552at 601.416 kb on - strand, within MIT1002_00552at 601.448 kb on + strand, within MIT1002_00552at 601.458 kb on + strand, within MIT1002_00552at 601.497 kb on - strand, within MIT1002_00552at 601.555 kb on + strand, within MIT1002_00552at 601.565 kb on + strand, within MIT1002_00552at 601.572 kb on + strand, within MIT1002_00552at 601.580 kb on - strand, within MIT1002_00552at 601.643 kb on - strand, within MIT1002_00552at 601.647 kb on + strand, within MIT1002_00552at 601.713 kb on + strand, within MIT1002_00552at 601.738 kb on + strand, within MIT1002_00552at 601.738 kb on + strand, within MIT1002_00552at 601.747 kb on + strand, within MIT1002_00552at 601.747 kb on + strand, within MIT1002_00552at 601.752 kb on + strand, within MIT1002_00552at 601.799 kb on - strandat 601.807 kb on + strandat 601.829 kb on + strandat 601.829 kb on + strandat 601.837 kb on - strandat 601.837 kb on - strandat 601.837 kb on - strandat 601.847 kb on - strandat 601.859 kb on - strandat 601.897 kb on - strandat 601.908 kb on + strandat 601.909 kb on - strandat 601.914 kb on - strandat 601.973 kb on - strand, within MIT1002_00553at 602.061 kb on - strand, within MIT1002_00553at 602.095 kb on - strand, within MIT1002_00553at 602.095 kb on - strand, within MIT1002_00553at 602.252 kb on + strand, within MIT1002_00553at 602.252 kb on - strand, within MIT1002_00553at 602.252 kb on - strand, within MIT1002_00553at 602.388 kb on - strand, within MIT1002_00553at 602.464 kb on - strand, within MIT1002_00553at 602.488 kb on - strand, within MIT1002_00553at 602.515 kb on + strand, within MIT1002_00553at 602.523 kb on - strand, within MIT1002_00553at 602.699 kb on + strand, within MIT1002_00553at 602.704 kb on + strand, within MIT1002_00553at 602.714 kb on + strand, within MIT1002_00553at 602.723 kb on - strand, within MIT1002_00553at 602.734 kb on + strand, within MIT1002_00553at 602.766 kb on + strand, within MIT1002_00553at 602.766 kb on + strand, within MIT1002_00553at 602.766 kb on + strand, within MIT1002_00553at 602.811 kb on + strand, within MIT1002_00553at 602.811 kb on + strand, within MIT1002_00553at 602.811 kb on + strand, within MIT1002_00553at 602.819 kb on - strand, within MIT1002_00553

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
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600,397 - MIT1002_00551 0.36 +1.5
600,418 - MIT1002_00551 0.37 -1.2
600,418 - MIT1002_00551 0.37 +0.8
600,432 - MIT1002_00551 0.38 +0.9
600,486 + MIT1002_00551 0.43 -0.2
600,502 + MIT1002_00551 0.44 +2.0
600,516 - MIT1002_00551 0.45 +0.9
600,610 + MIT1002_00551 0.52 +0.2
600,617 + MIT1002_00551 0.53 -0.8
600,636 + MIT1002_00551 0.54 -0.2
600,636 + MIT1002_00551 0.54 -0.3
600,644 - MIT1002_00551 0.55 +0.1
600,671 - MIT1002_00551 0.57 +0.0
600,732 + MIT1002_00551 0.62 -0.2
600,740 - MIT1002_00551 0.62 -0.1
600,740 - MIT1002_00551 0.62 -2.6
600,745 - MIT1002_00551 0.63 +0.4
600,783 - MIT1002_00551 0.66 +0.7
600,787 - MIT1002_00551 0.66 +0.3
600,795 + MIT1002_00551 0.67 -0.5
600,795 + MIT1002_00551 0.67 +0.1
600,795 + MIT1002_00551 0.67 +0.6
600,795 + MIT1002_00551 0.67 +0.9
600,829 + MIT1002_00551 0.69 -0.8
600,883 - MIT1002_00551 0.74 +0.6
600,894 - MIT1002_00551 0.75 +0.1
600,911 + MIT1002_00551 0.76 +0.1
600,956 + MIT1002_00551 0.79 -0.2
600,964 + MIT1002_00551 0.80 +0.2
600,964 + MIT1002_00551 0.80 -0.1
600,972 - MIT1002_00551 0.81 -0.8
601,008 - MIT1002_00551 0.84 +1.9
601,045 + MIT1002_00551 0.86 +1.0
601,066 - MIT1002_00551 0.88 +0.3
601,073 + MIT1002_00551 0.89 +0.4
601,080 + MIT1002_00551 0.89 -0.6
601,152 + +0.2
601,204 - +0.6
601,264 + +0.6
601,301 + -1.7
601,314 + -3.4
601,329 + -0.1
601,332 - +0.4
601,345 + -1.0
601,355 + +0.4
601,416 - MIT1002_00552 0.11 +1.3
601,416 - MIT1002_00552 0.11 +2.0
601,448 + MIT1002_00552 0.18 +1.4
601,458 + MIT1002_00552 0.20 -0.5
601,497 - MIT1002_00552 0.28 +1.4
601,555 + MIT1002_00552 0.41 +0.3
601,565 + MIT1002_00552 0.43 +0.7
601,572 + MIT1002_00552 0.44 +1.3
601,580 - MIT1002_00552 0.46 +0.2
601,643 - MIT1002_00552 0.59 -0.1
601,647 + MIT1002_00552 0.60 -0.2
601,713 + MIT1002_00552 0.74 -0.4
601,738 + MIT1002_00552 0.79 +0.1
601,738 + MIT1002_00552 0.79 +1.8
601,747 + MIT1002_00552 0.81 +0.2
601,747 + MIT1002_00552 0.81 +0.4
601,752 + MIT1002_00552 0.82 +0.1
601,799 - +0.3
601,807 + -0.1
601,829 + +0.1
601,829 + -0.1
601,837 - -2.2
601,837 - +0.8
601,837 - +1.4
601,847 - -0.1
601,859 - -1.4
601,897 - -0.2
601,908 + +1.5
601,909 - +0.5
601,914 - +1.2
601,973 - MIT1002_00553 0.10 -0.8
602,061 - MIT1002_00553 0.17 +1.4
602,095 - MIT1002_00553 0.20 -2.2
602,095 - MIT1002_00553 0.20 +0.0
602,252 + MIT1002_00553 0.32 -0.4
602,252 - MIT1002_00553 0.32 -0.2
602,252 - MIT1002_00553 0.32 -0.1
602,388 - MIT1002_00553 0.43 +0.5
602,464 - MIT1002_00553 0.49 -0.6
602,488 - MIT1002_00553 0.51 +1.2
602,515 + MIT1002_00553 0.53 -0.8
602,523 - MIT1002_00553 0.54 +0.7
602,699 + MIT1002_00553 0.68 -0.6
602,704 + MIT1002_00553 0.68 +1.8
602,714 + MIT1002_00553 0.69 -1.1
602,723 - MIT1002_00553 0.70 -2.5
602,734 + MIT1002_00553 0.71 +0.4
602,766 + MIT1002_00553 0.73 +0.3
602,766 + MIT1002_00553 0.73 +0.8
602,766 + MIT1002_00553 0.73 -2.7
602,811 + MIT1002_00553 0.77 -1.6
602,811 + MIT1002_00553 0.77 +1.5
602,811 + MIT1002_00553 0.77 +0.9
602,819 - MIT1002_00553 0.78 +0.1

Or see this region's nucleotide sequence