Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00351 and MIT1002_00352 are separated by 166 nucleotides MIT1002_00352 and MIT1002_00353 are separated by 2 nucleotides
MIT1002_00351: MIT1002_00351 - Degradation activator, at 376,836 to 377,870
_00351
MIT1002_00352: MIT1002_00352 - putative transporter, at 378,037 to 379,275
_00352
MIT1002_00353: MIT1002_00353 - Cytoplasmic trehalase, at 379,278 to 380,801
_00353
Position (kb) 378
379
380 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 377.061 kb on - strand, within MIT1002_00351 at 377.066 kb on + strand, within MIT1002_00351 at 377.076 kb on + strand, within MIT1002_00351 at 377.086 kb on + strand, within MIT1002_00351 at 377.091 kb on - strand, within MIT1002_00351 at 377.094 kb on - strand, within MIT1002_00351 at 377.119 kb on + strand, within MIT1002_00351 at 377.152 kb on + strand, within MIT1002_00351 at 377.218 kb on - strand, within MIT1002_00351 at 377.233 kb on - strand, within MIT1002_00351 at 377.246 kb on + strand, within MIT1002_00351 at 377.254 kb on - strand, within MIT1002_00351 at 377.306 kb on - strand, within MIT1002_00351 at 377.365 kb on + strand, within MIT1002_00351 at 377.425 kb on + strand, within MIT1002_00351 at 377.460 kb on + strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.483 kb on - strand, within MIT1002_00351 at 377.518 kb on + strand, within MIT1002_00351 at 377.526 kb on - strand, within MIT1002_00351 at 377.648 kb on + strand, within MIT1002_00351 at 377.648 kb on + strand, within MIT1002_00351 at 377.648 kb on + strand, within MIT1002_00351 at 377.651 kb on + strand, within MIT1002_00351 at 377.703 kb on - strand, within MIT1002_00351 at 377.831 kb on - strand at 377.833 kb on + strand at 377.848 kb on + strand at 377.848 kb on + strand at 377.848 kb on + strand at 377.848 kb on + strand at 377.848 kb on + strand at 377.848 kb on + strand at 377.848 kb on + strand at 377.853 kb on + strand at 377.853 kb on + strand at 377.854 kb on - strand at 377.856 kb on - strand at 377.856 kb on - strand at 377.856 kb on - strand at 377.856 kb on - strand at 377.858 kb on + strand at 377.995 kb on + strand at 378.006 kb on - strand at 378.008 kb on + strand at 378.030 kb on - strand at 378.094 kb on + strand at 378.094 kb on + strand at 378.094 kb on + strand at 378.096 kb on + strand at 378.096 kb on + strand at 378.102 kb on - strand at 378.102 kb on - strand at 378.104 kb on + strand at 378.113 kb on + strand at 378.194 kb on - strand, within MIT1002_00352 at 378.339 kb on + strand, within MIT1002_00352 at 378.491 kb on + strand, within MIT1002_00352 at 378.645 kb on - strand, within MIT1002_00352 at 378.651 kb on + strand, within MIT1002_00352 at 378.658 kb on - strand, within MIT1002_00352 at 378.676 kb on + strand, within MIT1002_00352 at 378.678 kb on - strand, within MIT1002_00352 at 378.678 kb on - strand, within MIT1002_00352 at 378.678 kb on - strand, within MIT1002_00352 at 378.718 kb on + strand, within MIT1002_00352 at 378.723 kb on + strand, within MIT1002_00352 at 378.731 kb on - strand, within MIT1002_00352 at 378.731 kb on - strand, within MIT1002_00352 at 378.760 kb on + strand, within MIT1002_00352 at 378.768 kb on - strand, within MIT1002_00352 at 378.768 kb on - strand, within MIT1002_00352 at 378.783 kb on - strand, within MIT1002_00352 at 378.820 kb on + strand, within MIT1002_00352 at 378.847 kb on + strand, within MIT1002_00352 at 378.847 kb on + strand, within MIT1002_00352 at 378.847 kb on + strand, within MIT1002_00352 at 378.847 kb on + strand, within MIT1002_00352 at 378.855 kb on - strand, within MIT1002_00352 at 378.855 kb on - strand, within MIT1002_00352 at 378.903 kb on - strand, within MIT1002_00352 at 378.905 kb on + strand, within MIT1002_00352 at 378.913 kb on - strand, within MIT1002_00352 at 378.920 kb on + strand, within MIT1002_00352 at 378.928 kb on - strand, within MIT1002_00352 at 378.983 kb on - strand, within MIT1002_00352 at 379.023 kb on + strand, within MIT1002_00352 at 379.023 kb on + strand, within MIT1002_00352 at 379.031 kb on - strand, within MIT1002_00352 at 379.031 kb on - strand, within MIT1002_00352 at 379.031 kb on - strand, within MIT1002_00352 at 379.031 kb on - strand, within MIT1002_00352 at 379.031 kb on - strand, within MIT1002_00352 at 379.033 kb on + strand, within MIT1002_00352 at 379.033 kb on + strand, within MIT1002_00352 at 379.041 kb on - strand, within MIT1002_00352 at 379.041 kb on - strand, within MIT1002_00352 at 379.041 kb on - strand, within MIT1002_00352 at 379.050 kb on + strand, within MIT1002_00352 at 379.116 kb on + strand, within MIT1002_00352 at 379.144 kb on + strand, within MIT1002_00352 at 379.144 kb on + strand, within MIT1002_00352 at 379.219 kb on + strand at 379.219 kb on + strand at 379.257 kb on + strand at 379.257 kb on + strand at 379.257 kb on + strand at 379.257 kb on + strand at 379.257 kb on + strand at 379.257 kb on + strand at 379.265 kb on - strand at 379.265 kb on - strand at 379.265 kb on - strand at 379.265 kb on - strand at 379.265 kb on - strand at 379.265 kb on - strand at 379.265 kb on - strand at 379.334 kb on + strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.414 kb on - strand at 379.438 kb on - strand, within MIT1002_00353 at 379.579 kb on - strand, within MIT1002_00353 at 379.579 kb on - strand, within MIT1002_00353 at 379.637 kb on + strand, within MIT1002_00353 at 379.645 kb on - strand, within MIT1002_00353 at 379.650 kb on - strand, within MIT1002_00353 at 379.737 kb on + strand, within MIT1002_00353 at 379.834 kb on - strand, within MIT1002_00353 at 379.856 kb on + strand, within MIT1002_00353 at 380.004 kb on + strand, within MIT1002_00353 at 380.079 kb on - strand, within MIT1002_00353 at 380.081 kb on - strand, within MIT1002_00353 at 380.136 kb on + strand, within MIT1002_00353 at 380.144 kb on - strand, within MIT1002_00353 at 380.268 kb on - strand, within MIT1002_00353 at 380.268 kb on - strand, within MIT1002_00353 at 380.270 kb on + strand, within MIT1002_00353
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 377,061 - MIT1002_00351 0.22 -0.8 377,066 + MIT1002_00351 0.22 -2.8 377,076 + MIT1002_00351 0.23 -1.9 377,086 + MIT1002_00351 0.24 -1.0 377,091 - MIT1002_00351 0.25 -1.6 377,094 - MIT1002_00351 0.25 +0.3 377,119 + MIT1002_00351 0.27 -0.6 377,152 + MIT1002_00351 0.31 -1.5 377,218 - MIT1002_00351 0.37 -3.7 377,233 - MIT1002_00351 0.38 -3.1 377,246 + MIT1002_00351 0.40 -0.3 377,254 - MIT1002_00351 0.40 -2.5 377,306 - MIT1002_00351 0.45 -1.5 377,365 + MIT1002_00351 0.51 -1.3 377,425 + MIT1002_00351 0.57 -0.4 377,460 + MIT1002_00351 0.60 -1.6 377,468 - MIT1002_00351 0.61 -1.0 377,468 - MIT1002_00351 0.61 -2.4 377,468 - MIT1002_00351 0.61 -2.6 377,468 - MIT1002_00351 0.61 -1.1 377,483 - MIT1002_00351 0.63 -1.4 377,518 + MIT1002_00351 0.66 -0.5 377,526 - MIT1002_00351 0.67 +0.3 377,648 + MIT1002_00351 0.78 -4.3 377,648 + MIT1002_00351 0.78 -1.5 377,648 + MIT1002_00351 0.78 -5.3 377,651 + MIT1002_00351 0.79 -2.1 377,703 - MIT1002_00351 0.84 -0.7 377,831 - -3.9 377,833 + -1.0 377,848 + +1.2 377,848 + +0.6 377,848 + +0.3 377,848 + -1.7 377,848 + +0.7 377,848 + -0.0 377,848 + +0.0 377,853 + -0.6 377,853 + -1.1 377,854 - -1.1 377,856 - +1.4 377,856 - -1.6 377,856 - -0.6 377,856 - -1.2 377,858 + -0.5 377,995 + -2.4 378,006 - +0.8 378,008 + +1.0 378,030 - +2.6 378,094 + -0.1 378,094 + -2.1 378,094 + -0.5 378,096 + -1.1 378,096 + -0.3 378,102 - -0.1 378,102 - +0.7 378,104 + +0.6 378,113 + +2.0 378,194 - MIT1002_00352 0.13 +0.6 378,339 + MIT1002_00352 0.24 +1.7 378,491 + MIT1002_00352 0.37 -4.1 378,645 - MIT1002_00352 0.49 +0.1 378,651 + MIT1002_00352 0.50 -2.0 378,658 - MIT1002_00352 0.50 -2.1 378,676 + MIT1002_00352 0.52 +0.1 378,678 - MIT1002_00352 0.52 +0.8 378,678 - MIT1002_00352 0.52 -2.1 378,678 - MIT1002_00352 0.52 -0.7 378,718 + MIT1002_00352 0.55 -0.7 378,723 + MIT1002_00352 0.55 -0.9 378,731 - MIT1002_00352 0.56 -0.2 378,731 - MIT1002_00352 0.56 +0.8 378,760 + MIT1002_00352 0.58 -1.4 378,768 - MIT1002_00352 0.59 +0.4 378,768 - MIT1002_00352 0.59 +0.5 378,783 - MIT1002_00352 0.60 +0.4 378,820 + MIT1002_00352 0.63 -0.4 378,847 + MIT1002_00352 0.65 +1.3 378,847 + MIT1002_00352 0.65 -0.8 378,847 + MIT1002_00352 0.65 -2.0 378,847 + MIT1002_00352 0.65 -1.9 378,855 - MIT1002_00352 0.66 +0.3 378,855 - MIT1002_00352 0.66 -0.5 378,903 - MIT1002_00352 0.70 +0.9 378,905 + MIT1002_00352 0.70 -1.1 378,913 - MIT1002_00352 0.71 +0.3 378,920 + MIT1002_00352 0.71 +0.3 378,928 - MIT1002_00352 0.72 -0.3 378,983 - MIT1002_00352 0.76 -1.1 379,023 + MIT1002_00352 0.80 -0.1 379,023 + MIT1002_00352 0.80 -0.3 379,031 - MIT1002_00352 0.80 +0.1 379,031 - MIT1002_00352 0.80 -1.6 379,031 - MIT1002_00352 0.80 -1.3 379,031 - MIT1002_00352 0.80 -0.2 379,031 - MIT1002_00352 0.80 +0.0 379,033 + MIT1002_00352 0.80 -0.4 379,033 + MIT1002_00352 0.80 +0.3 379,041 - MIT1002_00352 0.81 +0.7 379,041 - MIT1002_00352 0.81 +1.2 379,041 - MIT1002_00352 0.81 +0.1 379,050 + MIT1002_00352 0.82 +0.2 379,116 + MIT1002_00352 0.87 -1.3 379,144 + MIT1002_00352 0.89 +1.6 379,144 + MIT1002_00352 0.89 -1.9 379,219 + -0.2 379,219 + +0.6 379,257 + -0.8 379,257 + +0.7 379,257 + -0.1 379,257 + +1.2 379,257 + +1.7 379,257 + +0.4 379,265 - +1.2 379,265 - +0.5 379,265 - -1.8 379,265 - +0.7 379,265 - +0.6 379,265 - +0.3 379,265 - -0.0 379,334 + -2.8 379,342 - -3.2 379,342 - -0.4 379,414 - -2.0 379,438 - MIT1002_00353 0.10 -1.6 379,579 - MIT1002_00353 0.20 -1.5 379,579 - MIT1002_00353 0.20 -2.9 379,637 + MIT1002_00353 0.24 +0.0 379,645 - MIT1002_00353 0.24 -2.1 379,650 - MIT1002_00353 0.24 -0.8 379,737 + MIT1002_00353 0.30 -1.4 379,834 - MIT1002_00353 0.36 -0.7 379,856 + MIT1002_00353 0.38 -2.5 380,004 + MIT1002_00353 0.48 -1.0 380,079 - MIT1002_00353 0.53 +0.5 380,081 - MIT1002_00353 0.53 +0.2 380,136 + MIT1002_00353 0.56 -0.5 380,144 - MIT1002_00353 0.57 +0.7 380,268 - MIT1002_00353 0.65 -1.9 380,268 - MIT1002_00353 0.65 -0.2 380,270 + MIT1002_00353 0.65 -0.9
Or see this region's nucleotide sequence