Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00334 and MIT1002_00335 are separated by 17 nucleotides MIT1002_00335 and MIT1002_00336 are separated by 446 nucleotides MIT1002_00336 and MIT1002_00337 are separated by 155 nucleotides
MIT1002_00334: MIT1002_00334 - hypothetical protein, at 359,633 to 360,043
_00334
MIT1002_00335: MIT1002_00335 - hypothetical protein, at 360,061 to 360,432
_00335
MIT1002_00336: MIT1002_00336 - hypothetical protein, at 360,879 to 361,034
_00336
MIT1002_00337: MIT1002_00337 - Inner membrane transport protein YbaT, at 361,190 to 362,515
_00337
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.935 kb on - strand, within MIT1002_00334 at 360.075 kb on + strand at 360.167 kb on + strand, within MIT1002_00335 at 360.207 kb on - strand, within MIT1002_00335 at 360.220 kb on + strand, within MIT1002_00335 at 360.239 kb on - strand, within MIT1002_00335 at 360.271 kb on - strand, within MIT1002_00335 at 360.288 kb on + strand, within MIT1002_00335 at 360.340 kb on - strand, within MIT1002_00335 at 360.423 kb on + strand at 360.431 kb on - strand at 360.433 kb on + strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.442 kb on + strand at 360.450 kb on - strand at 360.532 kb on + strand at 360.558 kb on + strand at 360.558 kb on + strand at 360.566 kb on - strand at 360.678 kb on - strand at 360.678 kb on - strand at 360.692 kb on + strand at 360.699 kb on + strand at 360.728 kb on + strand at 360.730 kb on + strand at 360.746 kb on - strand at 360.774 kb on + strand at 360.787 kb on - strand at 360.830 kb on - strand at 360.874 kb on + strand at 360.929 kb on - strand, within MIT1002_00336 at 360.945 kb on - strand, within MIT1002_00336 at 360.948 kb on - strand, within MIT1002_00336 at 360.953 kb on + strand, within MIT1002_00336 at 360.955 kb on + strand, within MIT1002_00336 at 361.009 kb on + strand, within MIT1002_00336 at 361.030 kb on + strand at 361.071 kb on - strand at 361.105 kb on - strand at 361.144 kb on + strand at 361.229 kb on - strand at 361.361 kb on + strand, within MIT1002_00337 at 361.361 kb on + strand, within MIT1002_00337 at 361.361 kb on + strand, within MIT1002_00337 at 361.369 kb on - strand, within MIT1002_00337 at 361.369 kb on - strand, within MIT1002_00337 at 361.369 kb on - strand, within MIT1002_00337 at 361.382 kb on - strand, within MIT1002_00337 at 361.401 kb on + strand, within MIT1002_00337 at 361.411 kb on + strand, within MIT1002_00337 at 361.421 kb on - strand, within MIT1002_00337 at 361.457 kb on + strand, within MIT1002_00337 at 361.457 kb on + strand, within MIT1002_00337 at 361.465 kb on - strand, within MIT1002_00337 at 361.470 kb on - strand, within MIT1002_00337 at 361.612 kb on - strand, within MIT1002_00337 at 361.614 kb on + strand, within MIT1002_00337 at 361.677 kb on + strand, within MIT1002_00337 at 361.685 kb on - strand, within MIT1002_00337 at 361.698 kb on + strand, within MIT1002_00337 at 361.706 kb on - strand, within MIT1002_00337 at 361.917 kb on - strand, within MIT1002_00337 at 361.962 kb on - strand, within MIT1002_00337 at 361.994 kb on - strand, within MIT1002_00337
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 359,935 - MIT1002_00334 0.73 -0.2 360,075 + -2.5 360,167 + MIT1002_00335 0.28 -1.1 360,207 - MIT1002_00335 0.39 -1.1 360,220 + MIT1002_00335 0.43 -0.5 360,239 - MIT1002_00335 0.48 -2.2 360,271 - MIT1002_00335 0.56 -0.1 360,288 + MIT1002_00335 0.61 -0.3 360,340 - MIT1002_00335 0.75 -2.1 360,423 + +0.7 360,431 - -0.4 360,433 + +0.2 360,440 - -0.5 360,440 - -0.5 360,440 - +0.9 360,440 - -2.9 360,440 - -3.7 360,440 - -1.5 360,440 - +0.7 360,442 + -0.0 360,450 - -0.9 360,532 + -0.1 360,558 + -0.3 360,558 + -2.7 360,566 - -2.3 360,678 - +1.1 360,678 - +0.1 360,692 + +1.1 360,699 + +0.1 360,728 + +0.5 360,730 + +0.6 360,746 - -1.0 360,774 + -0.1 360,787 - +0.3 360,830 - -0.9 360,874 + +0.4 360,929 - MIT1002_00336 0.32 +1.8 360,945 - MIT1002_00336 0.42 -0.5 360,948 - MIT1002_00336 0.44 -1.2 360,953 + MIT1002_00336 0.47 -0.8 360,955 + MIT1002_00336 0.49 -0.8 361,009 + MIT1002_00336 0.83 +0.4 361,030 + +1.6 361,071 - +0.4 361,105 - -0.0 361,144 + -3.1 361,229 - +0.9 361,361 + MIT1002_00337 0.13 +1.1 361,361 + MIT1002_00337 0.13 -2.8 361,361 + MIT1002_00337 0.13 +2.4 361,369 - MIT1002_00337 0.13 -0.0 361,369 - MIT1002_00337 0.13 -0.2 361,369 - MIT1002_00337 0.13 -1.8 361,382 - MIT1002_00337 0.14 +1.0 361,401 + MIT1002_00337 0.16 -2.6 361,411 + MIT1002_00337 0.17 -0.0 361,421 - MIT1002_00337 0.17 -0.2 361,457 + MIT1002_00337 0.20 -1.7 361,457 + MIT1002_00337 0.20 +1.2 361,465 - MIT1002_00337 0.21 +0.1 361,470 - MIT1002_00337 0.21 +0.4 361,612 - MIT1002_00337 0.32 +0.2 361,614 + MIT1002_00337 0.32 -1.1 361,677 + MIT1002_00337 0.37 -0.3 361,685 - MIT1002_00337 0.37 -0.6 361,698 + MIT1002_00337 0.38 -0.8 361,706 - MIT1002_00337 0.39 +0.1 361,917 - MIT1002_00337 0.55 +0.3 361,962 - MIT1002_00337 0.58 +0.6 361,994 - MIT1002_00337 0.61 -1.6
Or see this region's nucleotide sequence