Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00262 and MIT1002_00263 are separated by 8 nucleotides MIT1002_00263 and MIT1002_00264 are separated by 15 nucleotides MIT1002_00264 and MIT1002_00265 are separated by 96 nucleotides MIT1002_00265 and MIT1002_00266 are separated by 72 nucleotides MIT1002_00266 and MIT1002_00267 are separated by 28 nucleotides
MIT1002_00262: MIT1002_00262 - hypothetical protein, at 291,141 to 291,263
_00262
MIT1002_00263: MIT1002_00263 - hypothetical protein, at 291,272 to 291,487
_00263
MIT1002_00264: MIT1002_00264 - putative heme-binding domain protein, at 291,503 to 291,796
_00264
MIT1002_00265: MIT1002_00265 - hypothetical protein, at 291,893 to 292,324
_00265
MIT1002_00266: MIT1002_00266 - hypothetical protein, at 292,397 to 292,753
_00266
MIT1002_00267: MIT1002_00267 - hypothetical protein, at 292,782 to 293,627
_00267
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 290.942 kb on + strand at 290.942 kb on + strand at 290.950 kb on - strand at 290.950 kb on - strand at 290.983 kb on - strand at 290.985 kb on - strand at 291.090 kb on - strand at 291.137 kb on - strand at 291.147 kb on - strand at 291.162 kb on - strand, within MIT1002_00262 at 291.169 kb on + strand, within MIT1002_00262 at 291.196 kb on - strand, within MIT1002_00262 at 291.234 kb on - strand, within MIT1002_00262 at 291.240 kb on + strand, within MIT1002_00262 at 291.248 kb on - strand, within MIT1002_00262 at 291.367 kb on - strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.412 kb on - strand, within MIT1002_00263 at 291.440 kb on - strand, within MIT1002_00263 at 291.482 kb on + strand at 291.482 kb on + strand at 291.490 kb on - strand at 291.490 kb on - strand at 291.561 kb on + strand, within MIT1002_00264 at 291.594 kb on + strand, within MIT1002_00264 at 291.595 kb on - strand, within MIT1002_00264 at 291.606 kb on + strand, within MIT1002_00264 at 291.622 kb on - strand, within MIT1002_00264 at 291.649 kb on + strand, within MIT1002_00264 at 291.701 kb on - strand, within MIT1002_00264 at 291.758 kb on - strand, within MIT1002_00264 at 291.806 kb on - strand at 291.806 kb on - strand at 291.808 kb on - strand at 291.823 kb on + strand at 291.919 kb on + strand at 291.926 kb on + strand at 292.049 kb on + strand, within MIT1002_00265 at 292.049 kb on + strand, within MIT1002_00265 at 292.049 kb on + strand, within MIT1002_00265 at 292.049 kb on + strand, within MIT1002_00265 at 292.057 kb on - strand, within MIT1002_00265 at 292.057 kb on - strand, within MIT1002_00265 at 292.057 kb on - strand, within MIT1002_00265 at 292.068 kb on - strand, within MIT1002_00265 at 292.230 kb on + strand, within MIT1002_00265 at 292.269 kb on + strand, within MIT1002_00265 at 292.297 kb on + strand at 292.297 kb on + strand at 292.337 kb on + strand at 292.344 kb on + strand at 292.358 kb on - strand at 292.363 kb on + strand at 292.424 kb on + strand at 292.447 kb on + strand, within MIT1002_00266 at 292.455 kb on - strand, within MIT1002_00266 at 292.455 kb on - strand, within MIT1002_00266 at 292.476 kb on - strand, within MIT1002_00266 at 292.491 kb on - strand, within MIT1002_00266 at 292.534 kb on - strand, within MIT1002_00266 at 292.534 kb on - strand, within MIT1002_00266 at 292.541 kb on + strand, within MIT1002_00266 at 292.579 kb on + strand, within MIT1002_00266 at 292.587 kb on - strand, within MIT1002_00266 at 292.587 kb on - strand, within MIT1002_00266 at 292.587 kb on - strand, within MIT1002_00266 at 292.587 kb on - strand, within MIT1002_00266 at 292.587 kb on - strand, within MIT1002_00266 at 292.589 kb on + strand, within MIT1002_00266 at 292.597 kb on - strand, within MIT1002_00266 at 292.597 kb on - strand, within MIT1002_00266 at 292.681 kb on - strand, within MIT1002_00266 at 292.681 kb on - strand, within MIT1002_00266 at 292.777 kb on - strand at 292.814 kb on - strand at 292.861 kb on - strand at 292.872 kb on + strand, within MIT1002_00267 at 292.878 kb on - strand, within MIT1002_00267 at 292.885 kb on + strand, within MIT1002_00267 at 292.885 kb on + strand, within MIT1002_00267 at 292.893 kb on - strand, within MIT1002_00267 at 292.947 kb on + strand, within MIT1002_00267 at 292.955 kb on - strand, within MIT1002_00267 at 293.026 kb on + strand, within MIT1002_00267 at 293.026 kb on + strand, within MIT1002_00267 at 293.034 kb on - strand, within MIT1002_00267 at 293.185 kb on + strand, within MIT1002_00267 at 293.203 kb on - strand, within MIT1002_00267 at 293.206 kb on - strand, within MIT1002_00267 at 293.234 kb on - strand, within MIT1002_00267 at 293.258 kb on - strand, within MIT1002_00267 at 293.260 kb on + strand, within MIT1002_00267 at 293.264 kb on + strand, within MIT1002_00267 at 293.268 kb on - strand, within MIT1002_00267 at 293.322 kb on - strand, within MIT1002_00267 at 293.323 kb on - strand, within MIT1002_00267
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 290,942 + +0.1 290,942 + -1.5 290,950 - +0.8 290,950 - +0.6 290,983 - +0.6 290,985 - +1.4 291,090 - -0.8 291,137 - -0.4 291,147 - -1.8 291,162 - MIT1002_00262 0.17 -1.3 291,169 + MIT1002_00262 0.23 +0.7 291,196 - MIT1002_00262 0.45 +1.5 291,234 - MIT1002_00262 0.76 -0.0 291,240 + MIT1002_00262 0.80 +0.1 291,248 - MIT1002_00262 0.87 +0.2 291,367 - MIT1002_00263 0.44 -1.1 291,394 + MIT1002_00263 0.56 +0.8 291,394 + MIT1002_00263 0.56 -0.8 291,394 + MIT1002_00263 0.56 +1.0 291,394 + MIT1002_00263 0.56 +0.1 291,402 - MIT1002_00263 0.60 -0.5 291,402 - MIT1002_00263 0.60 +0.8 291,402 - MIT1002_00263 0.60 +0.2 291,402 - MIT1002_00263 0.60 -0.2 291,402 - MIT1002_00263 0.60 -1.7 291,412 - MIT1002_00263 0.65 -0.8 291,440 - MIT1002_00263 0.78 -0.2 291,482 + -0.1 291,482 + +0.2 291,490 - -0.3 291,490 - +0.0 291,561 + MIT1002_00264 0.20 -0.2 291,594 + MIT1002_00264 0.31 -3.4 291,595 - MIT1002_00264 0.31 +0.7 291,606 + MIT1002_00264 0.35 +1.9 291,622 - MIT1002_00264 0.40 +1.1 291,649 + MIT1002_00264 0.50 -0.1 291,701 - MIT1002_00264 0.67 +0.3 291,758 - MIT1002_00264 0.87 -2.6 291,806 - +0.1 291,806 - -0.3 291,808 - +1.8 291,823 + +0.4 291,919 + -0.6 291,926 + +0.6 292,049 + MIT1002_00265 0.36 +1.3 292,049 + MIT1002_00265 0.36 +0.5 292,049 + MIT1002_00265 0.36 -0.4 292,049 + MIT1002_00265 0.36 -0.4 292,057 - MIT1002_00265 0.38 -0.2 292,057 - MIT1002_00265 0.38 +1.1 292,057 - MIT1002_00265 0.38 +1.2 292,068 - MIT1002_00265 0.41 +0.3 292,230 + MIT1002_00265 0.78 +1.7 292,269 + MIT1002_00265 0.87 +1.7 292,297 + -0.3 292,297 + +0.3 292,337 + -0.9 292,344 + +0.1 292,358 - +1.0 292,363 + +1.6 292,424 + +0.6 292,447 + MIT1002_00266 0.14 -0.7 292,455 - MIT1002_00266 0.16 -0.0 292,455 - MIT1002_00266 0.16 +1.8 292,476 - MIT1002_00266 0.22 +0.8 292,491 - MIT1002_00266 0.26 -0.4 292,534 - MIT1002_00266 0.38 -2.1 292,534 - MIT1002_00266 0.38 -0.3 292,541 + MIT1002_00266 0.40 -2.1 292,579 + MIT1002_00266 0.51 -1.4 292,587 - MIT1002_00266 0.53 +0.0 292,587 - MIT1002_00266 0.53 +0.3 292,587 - MIT1002_00266 0.53 +0.4 292,587 - MIT1002_00266 0.53 +1.1 292,587 - MIT1002_00266 0.53 -1.4 292,589 + MIT1002_00266 0.54 +0.6 292,597 - MIT1002_00266 0.56 +0.4 292,597 - MIT1002_00266 0.56 +0.4 292,681 - MIT1002_00266 0.80 -0.4 292,681 - MIT1002_00266 0.80 -0.4 292,777 - +0.4 292,814 - -1.4 292,861 - -0.5 292,872 + MIT1002_00267 0.11 +1.0 292,878 - MIT1002_00267 0.11 +0.2 292,885 + MIT1002_00267 0.12 -0.1 292,885 + MIT1002_00267 0.12 -0.5 292,893 - MIT1002_00267 0.13 +0.2 292,947 + MIT1002_00267 0.20 -0.5 292,955 - MIT1002_00267 0.20 +0.1 293,026 + MIT1002_00267 0.29 -1.8 293,026 + MIT1002_00267 0.29 -0.7 293,034 - MIT1002_00267 0.30 +0.5 293,185 + MIT1002_00267 0.48 +0.3 293,203 - MIT1002_00267 0.50 -0.1 293,206 - MIT1002_00267 0.50 +1.2 293,234 - MIT1002_00267 0.53 -1.3 293,258 - MIT1002_00267 0.56 -1.1 293,260 + MIT1002_00267 0.57 -0.4 293,264 + MIT1002_00267 0.57 +0.4 293,268 - MIT1002_00267 0.57 +0.2 293,322 - MIT1002_00267 0.64 -1.9 293,323 - MIT1002_00267 0.64 +1.9
Or see this region's nucleotide sequence