Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00148 and MIT1002_00149 are separated by 213 nucleotides MIT1002_00149 and MIT1002_00150 are separated by 86 nucleotides
MIT1002_00148: MIT1002_00148 - ATP-dependent DNA helicase RecQ, at 161,640 to 163,481
_00148
MIT1002_00149: MIT1002_00149 - putative domain 1, at 163,695 to 164,207
_00149
MIT1002_00150: MIT1002_00150 - Magnesium transporter MgtE, at 164,294 to 165,631
_00150
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 162.793 kb on + strand, within MIT1002_00148 at 162.793 kb on + strand, within MIT1002_00148 at 162.801 kb on - strand, within MIT1002_00148 at 162.840 kb on - strand, within MIT1002_00148 at 162.854 kb on + strand, within MIT1002_00148 at 162.862 kb on + strand, within MIT1002_00148 at 162.869 kb on + strand, within MIT1002_00148 at 162.870 kb on - strand, within MIT1002_00148 at 162.877 kb on - strand, within MIT1002_00148 at 162.908 kb on + strand, within MIT1002_00148 at 162.973 kb on + strand, within MIT1002_00148 at 162.973 kb on + strand, within MIT1002_00148 at 163.052 kb on + strand, within MIT1002_00148 at 163.087 kb on - strand, within MIT1002_00148 at 163.087 kb on - strand, within MIT1002_00148 at 163.098 kb on + strand, within MIT1002_00148 at 163.108 kb on - strand, within MIT1002_00148 at 163.202 kb on + strand, within MIT1002_00148 at 163.209 kb on - strand, within MIT1002_00148 at 163.209 kb on - strand, within MIT1002_00148 at 163.219 kb on - strand, within MIT1002_00148 at 163.219 kb on - strand, within MIT1002_00148 at 163.219 kb on - strand, within MIT1002_00148 at 163.229 kb on - strand, within MIT1002_00148 at 163.305 kb on + strand at 163.453 kb on + strand at 163.556 kb on + strand at 163.556 kb on + strand at 163.556 kb on + strand at 163.561 kb on + strand at 163.564 kb on - strand at 163.569 kb on + strand at 163.847 kb on + strand, within MIT1002_00149 at 163.924 kb on + strand, within MIT1002_00149 at 163.956 kb on - strand, within MIT1002_00149 at 163.978 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 164.003 kb on - strand, within MIT1002_00149 at 164.003 kb on - strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.070 kb on - strand, within MIT1002_00149 at 164.070 kb on - strand, within MIT1002_00149 at 164.080 kb on - strand, within MIT1002_00149 at 164.153 kb on - strand, within MIT1002_00149 at 164.191 kb on + strand at 164.220 kb on - strand at 164.222 kb on + strand at 164.249 kb on - strand at 164.256 kb on + strand at 164.264 kb on - strand at 164.282 kb on - strand at 164.381 kb on - strand at 164.389 kb on - strand at 164.390 kb on + strand at 164.392 kb on + strand at 164.401 kb on - strand at 164.544 kb on - strand, within MIT1002_00150 at 164.640 kb on + strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.667 kb on - strand, within MIT1002_00150 at 164.709 kb on + strand, within MIT1002_00150 at 164.753 kb on + strand, within MIT1002_00150 at 164.753 kb on + strand, within MIT1002_00150 at 164.753 kb on + strand, within MIT1002_00150 at 164.761 kb on - strand, within MIT1002_00150 at 164.761 kb on - strand, within MIT1002_00150 at 164.761 kb on - strand, within MIT1002_00150 at 164.788 kb on - strand, within MIT1002_00150 at 164.836 kb on + strand, within MIT1002_00150 at 164.851 kb on + strand, within MIT1002_00150 at 164.859 kb on - strand, within MIT1002_00150 at 164.910 kb on + strand, within MIT1002_00150 at 164.927 kb on - strand, within MIT1002_00150 at 164.929 kb on - strand, within MIT1002_00150 at 165.012 kb on + strand, within MIT1002_00150 at 165.012 kb on + strand, within MIT1002_00150 at 165.020 kb on - strand, within MIT1002_00150 at 165.020 kb on - strand, within MIT1002_00150 at 165.020 kb on - strand, within MIT1002_00150 at 165.025 kb on - strand, within MIT1002_00150 at 165.025 kb on - strand, within MIT1002_00150 at 165.025 kb on - strand, within MIT1002_00150 at 165.081 kb on + strand, within MIT1002_00150 at 165.081 kb on + strand, within MIT1002_00150 at 165.089 kb on - strand, within MIT1002_00150 at 165.158 kb on - strand, within MIT1002_00150
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2 remove 162,793 + MIT1002_00148 0.63 +0.5 162,793 + MIT1002_00148 0.63 -1.5 162,801 - MIT1002_00148 0.63 +0.2 162,840 - MIT1002_00148 0.65 -1.2 162,854 + MIT1002_00148 0.66 +0.8 162,862 + MIT1002_00148 0.66 -0.3 162,869 + MIT1002_00148 0.67 -0.3 162,870 - MIT1002_00148 0.67 +0.5 162,877 - MIT1002_00148 0.67 +2.3 162,908 + MIT1002_00148 0.69 +0.8 162,973 + MIT1002_00148 0.72 +0.1 162,973 + MIT1002_00148 0.72 -1.3 163,052 + MIT1002_00148 0.77 +0.5 163,087 - MIT1002_00148 0.79 +1.9 163,087 - MIT1002_00148 0.79 +0.4 163,098 + MIT1002_00148 0.79 +1.7 163,108 - MIT1002_00148 0.80 -0.9 163,202 + MIT1002_00148 0.85 -0.1 163,209 - MIT1002_00148 0.85 +0.9 163,209 - MIT1002_00148 0.85 +0.7 163,219 - MIT1002_00148 0.86 +0.4 163,219 - MIT1002_00148 0.86 -0.0 163,219 - MIT1002_00148 0.86 -0.6 163,229 - MIT1002_00148 0.86 -0.8 163,305 + -0.0 163,453 + +0.5 163,556 + -1.4 163,556 + -1.0 163,556 + +2.0 163,561 + -0.7 163,564 - +0.4 163,569 + -1.9 163,847 + MIT1002_00149 0.30 -0.1 163,924 + MIT1002_00149 0.45 -1.7 163,956 - MIT1002_00149 0.51 +1.2 163,978 + MIT1002_00149 0.55 -0.4 163,995 + MIT1002_00149 0.58 +0.9 163,995 + MIT1002_00149 0.58 +0.1 163,995 + MIT1002_00149 0.58 -0.7 163,995 + MIT1002_00149 0.58 +1.3 163,995 + MIT1002_00149 0.58 -1.2 164,003 - MIT1002_00149 0.60 -0.4 164,003 - MIT1002_00149 0.60 +0.4 164,062 + MIT1002_00149 0.72 +0.0 164,062 + MIT1002_00149 0.72 +0.3 164,062 + MIT1002_00149 0.72 +0.1 164,070 - MIT1002_00149 0.73 +2.0 164,070 - MIT1002_00149 0.73 +0.1 164,080 - MIT1002_00149 0.75 -0.8 164,153 - MIT1002_00149 0.89 -1.5 164,191 + -0.4 164,220 - -1.3 164,222 + +1.9 164,249 - -1.2 164,256 + +0.0 164,264 - +0.1 164,282 - +0.3 164,381 - +0.8 164,389 - -0.5 164,390 + -0.1 164,392 + +1.3 164,401 - -0.4 164,544 - MIT1002_00150 0.19 +1.7 164,640 + MIT1002_00150 0.26 -0.1 164,648 - MIT1002_00150 0.26 +0.0 164,648 - MIT1002_00150 0.26 -0.2 164,648 - MIT1002_00150 0.26 +1.0 164,648 - MIT1002_00150 0.26 +0.0 164,667 - MIT1002_00150 0.28 -0.5 164,709 + MIT1002_00150 0.31 -0.9 164,753 + MIT1002_00150 0.34 -0.4 164,753 + MIT1002_00150 0.34 -1.5 164,753 + MIT1002_00150 0.34 +0.8 164,761 - MIT1002_00150 0.35 +0.4 164,761 - MIT1002_00150 0.35 -0.1 164,761 - MIT1002_00150 0.35 -0.7 164,788 - MIT1002_00150 0.37 +1.2 164,836 + MIT1002_00150 0.41 -1.8 164,851 + MIT1002_00150 0.42 -2.1 164,859 - MIT1002_00150 0.42 +0.8 164,910 + MIT1002_00150 0.46 +1.1 164,927 - MIT1002_00150 0.47 +1.4 164,929 - MIT1002_00150 0.47 +0.4 165,012 + MIT1002_00150 0.54 +1.2 165,012 + MIT1002_00150 0.54 +0.2 165,020 - MIT1002_00150 0.54 +0.3 165,020 - MIT1002_00150 0.54 +1.0 165,020 - MIT1002_00150 0.54 -1.4 165,025 - MIT1002_00150 0.55 +0.2 165,025 - MIT1002_00150 0.55 -2.1 165,025 - MIT1002_00150 0.55 +0.1 165,081 + MIT1002_00150 0.59 -0.2 165,081 + MIT1002_00150 0.59 +0.6 165,089 - MIT1002_00150 0.59 -0.7 165,158 - MIT1002_00150 0.65 -0.6
Or see this region's nucleotide sequence