Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00116

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00115 and MIT1002_00116 overlap by 4 nucleotidesMIT1002_00116 and MIT1002_00117 overlap by 1 nucleotides MIT1002_00115: MIT1002_00115 - Iron(III)-binding periplasmic protein, at 123,973 to 125,007 _00115 MIT1002_00116: MIT1002_00116 - Spermidine/putrescine transport system permease protein PotB, at 125,004 to 126,524 _00116 MIT1002_00117: MIT1002_00117 - Maltose/maltodextrin import ATP-binding protein MalK, at 126,524 to 127,555 _00117 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1at 124.324 kb on + strand, within MIT1002_00115at 124.332 kb on - strand, within MIT1002_00115at 124.645 kb on - strand, within MIT1002_00115at 124.687 kb on - strand, within MIT1002_00115at 125.096 kb on - strandat 125.138 kb on - strandat 125.355 kb on + strand, within MIT1002_00116at 126.004 kb on + strand, within MIT1002_00116at 126.203 kb on - strand, within MIT1002_00116at 126.223 kb on + strand, within MIT1002_00116at 126.268 kb on - strand, within MIT1002_00116at 126.372 kb on + strand, within MIT1002_00116at 126.497 kb on - strandat 126.934 kb on + strand, within MIT1002_00117at 127.037 kb on + strand, within MIT1002_00117at 127.152 kb on + strand, within MIT1002_00117at 127.160 kb on - strand, within MIT1002_00117at 127.359 kb on + strand, within MIT1002_00117at 127.433 kb on + strand, within MIT1002_00117

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
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124,324 + MIT1002_00115 0.34 -2.3
124,332 - MIT1002_00115 0.35 -2.2
124,645 - MIT1002_00115 0.65 -1.8
124,687 - MIT1002_00115 0.69 -1.9
125,096 - -1.2
125,138 - -1.2
125,355 + MIT1002_00116 0.23 -1.4
126,004 + MIT1002_00116 0.66 -1.2
126,203 - MIT1002_00116 0.79 -1.4
126,223 + MIT1002_00116 0.80 -0.2
126,268 - MIT1002_00116 0.83 -1.6
126,372 + MIT1002_00116 0.90 -0.6
126,497 - -2.1
126,934 + MIT1002_00117 0.40 -1.2
127,037 + MIT1002_00117 0.50 -2.4
127,152 + MIT1002_00117 0.61 -0.9
127,160 - MIT1002_00117 0.62 -2.4
127,359 + MIT1002_00117 0.81 -2.4
127,433 + MIT1002_00117 0.88 -1.2

Or see this region's nucleotide sequence