Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00064

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00063 and MIT1002_00064 overlap by 4 nucleotidesMIT1002_00064 and MIT1002_00065 overlap by 1 nucleotidesMIT1002_00065 and MIT1002_00066 are separated by 141 nucleotides MIT1002_00063: MIT1002_00063 - 2-amino-3-ketobutyrate coenzyme A ligase, at 68,853 to 70,049 _00063 MIT1002_00064: MIT1002_00064 - L-threonine 3-dehydrogenase, at 70,046 to 71,071 _00064 MIT1002_00065: MIT1002_00065 - Thiosulfate sulfurtransferase GlpE, at 71,071 to 71,382 _00065 MIT1002_00066: MIT1002_00066 - Rhomboid protease GlpG, at 71,524 to 72,387 _00066 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.054 kb on + strand, within MIT1002_00063at 69.162 kb on - strand, within MIT1002_00063at 69.224 kb on - strand, within MIT1002_00063at 69.257 kb on - strand, within MIT1002_00063at 69.269 kb on + strand, within MIT1002_00063at 69.277 kb on + strand, within MIT1002_00063at 69.287 kb on + strand, within MIT1002_00063at 69.287 kb on + strand, within MIT1002_00063at 69.307 kb on - strand, within MIT1002_00063at 69.344 kb on + strand, within MIT1002_00063at 69.466 kb on - strand, within MIT1002_00063at 69.526 kb on + strand, within MIT1002_00063at 69.533 kb on + strand, within MIT1002_00063at 69.548 kb on - strand, within MIT1002_00063at 69.585 kb on + strand, within MIT1002_00063at 69.585 kb on + strand, within MIT1002_00063at 69.590 kb on + strand, within MIT1002_00063at 69.593 kb on - strand, within MIT1002_00063at 69.593 kb on - strand, within MIT1002_00063at 69.607 kb on + strand, within MIT1002_00063at 69.715 kb on - strand, within MIT1002_00063at 69.761 kb on - strand, within MIT1002_00063at 69.761 kb on - strand, within MIT1002_00063at 69.917 kb on + strand, within MIT1002_00063at 69.925 kb on - strand, within MIT1002_00063at 69.933 kb on - strandat 69.939 kb on + strandat 69.939 kb on + strandat 69.939 kb on + strandat 69.947 kb on - strandat 69.962 kb on + strandat 69.972 kb on + strandat 69.979 kb on + strandat 69.979 kb on + strandat 69.980 kb on - strandat 69.981 kb on - strandat 69.987 kb on - strandat 70.093 kb on + strandat 70.105 kb on + strandat 70.124 kb on - strandat 70.217 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.279 kb on + strand, within MIT1002_00064at 70.279 kb on + strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.349 kb on - strand, within MIT1002_00064at 70.380 kb on + strand, within MIT1002_00064at 70.478 kb on - strand, within MIT1002_00064at 70.505 kb on + strand, within MIT1002_00064at 70.557 kb on - strand, within MIT1002_00064at 70.605 kb on - strand, within MIT1002_00064at 70.630 kb on + strand, within MIT1002_00064at 70.644 kb on + strand, within MIT1002_00064at 70.652 kb on - strand, within MIT1002_00064at 70.803 kb on - strand, within MIT1002_00064at 70.828 kb on + strand, within MIT1002_00064at 70.839 kb on - strand, within MIT1002_00064at 70.918 kb on + strand, within MIT1002_00064at 70.967 kb on - strand, within MIT1002_00064at 71.039 kb on - strandat 71.039 kb on - strandat 71.122 kb on + strand, within MIT1002_00065at 71.130 kb on - strand, within MIT1002_00065at 71.149 kb on + strand, within MIT1002_00065at 71.149 kb on + strand, within MIT1002_00065at 71.170 kb on - strand, within MIT1002_00065at 71.175 kb on + strand, within MIT1002_00065at 71.175 kb on + strand, within MIT1002_00065at 71.254 kb on + strand, within MIT1002_00065at 71.403 kb on - strandat 71.453 kb on + strandat 71.461 kb on - strandat 71.461 kb on - strandat 71.479 kb on - strandat 71.609 kb on + strandat 71.609 kb on + strandat 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.651 kb on + strand, within MIT1002_00066at 71.659 kb on + strand, within MIT1002_00066at 71.659 kb on + strand, within MIT1002_00066at 71.703 kb on + strand, within MIT1002_00066at 71.826 kb on - strand, within MIT1002_00066at 72.019 kb on - strand, within MIT1002_00066at 72.064 kb on - strand, within MIT1002_00066

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
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69,054 + MIT1002_00063 0.17 -0.8
69,162 - MIT1002_00063 0.26 +1.0
69,224 - MIT1002_00063 0.31 +0.1
69,257 - MIT1002_00063 0.34 +0.6
69,269 + MIT1002_00063 0.35 +0.6
69,277 + MIT1002_00063 0.35 -3.2
69,287 + MIT1002_00063 0.36 -1.1
69,287 + MIT1002_00063 0.36 -0.9
69,307 - MIT1002_00063 0.38 -0.0
69,344 + MIT1002_00063 0.41 -0.2
69,466 - MIT1002_00063 0.51 +0.9
69,526 + MIT1002_00063 0.56 +0.2
69,533 + MIT1002_00063 0.57 -0.1
69,548 - MIT1002_00063 0.58 -0.1
69,585 + MIT1002_00063 0.61 -0.2
69,585 + MIT1002_00063 0.61 +2.6
69,590 + MIT1002_00063 0.62 +1.2
69,593 - MIT1002_00063 0.62 -1.9
69,593 - MIT1002_00063 0.62 +1.0
69,607 + MIT1002_00063 0.63 -1.5
69,715 - MIT1002_00063 0.72 +0.4
69,761 - MIT1002_00063 0.76 -0.2
69,761 - MIT1002_00063 0.76 -0.6
69,917 + MIT1002_00063 0.89 -0.4
69,925 - MIT1002_00063 0.90 +0.3
69,933 - +0.8
69,939 + -1.8
69,939 + +1.6
69,939 + -1.1
69,947 - -0.3
69,962 + +0.5
69,972 + +0.7
69,979 + +0.2
69,979 + -0.5
69,980 - +0.1
69,981 - +0.0
69,987 - +0.1
70,093 + +0.4
70,105 + +0.8
70,124 - -2.6
70,217 + MIT1002_00064 0.17 -1.2
70,278 + MIT1002_00064 0.23 -2.6
70,278 + MIT1002_00064 0.23 +0.2
70,278 + MIT1002_00064 0.23 -0.2
70,278 + MIT1002_00064 0.23 -0.8
70,279 + MIT1002_00064 0.23 -1.0
70,279 + MIT1002_00064 0.23 +1.0
70,286 - MIT1002_00064 0.23 +1.2
70,286 - MIT1002_00064 0.23 +0.8
70,286 - MIT1002_00064 0.23 -3.2
70,286 - MIT1002_00064 0.23 +0.3
70,349 - MIT1002_00064 0.30 +0.1
70,380 + MIT1002_00064 0.33 -1.0
70,478 - MIT1002_00064 0.42 -3.3
70,505 + MIT1002_00064 0.45 -3.1
70,557 - MIT1002_00064 0.50 +0.3
70,605 - MIT1002_00064 0.54 -0.4
70,630 + MIT1002_00064 0.57 -1.3
70,644 + MIT1002_00064 0.58 +0.4
70,652 - MIT1002_00064 0.59 -0.6
70,803 - MIT1002_00064 0.74 -0.1
70,828 + MIT1002_00064 0.76 -1.2
70,839 - MIT1002_00064 0.77 -0.6
70,918 + MIT1002_00064 0.85 +0.8
70,967 - MIT1002_00064 0.90 -1.4
71,039 - -1.1
71,039 - +1.2
71,122 + MIT1002_00065 0.16 +0.7
71,130 - MIT1002_00065 0.19 +1.1
71,149 + MIT1002_00065 0.25 +0.6
71,149 + MIT1002_00065 0.25 +0.4
71,170 - MIT1002_00065 0.32 -0.1
71,175 + MIT1002_00065 0.33 -0.8
71,175 + MIT1002_00065 0.33 -0.0
71,254 + MIT1002_00065 0.59 -0.6
71,403 - -0.1
71,453 + +1.3
71,461 - +1.6
71,461 - -0.4
71,479 - -0.0
71,609 + -0.3
71,609 + -2.4
71,617 - MIT1002_00066 0.11 -2.0
71,617 - MIT1002_00066 0.11 +0.2
71,617 - MIT1002_00066 0.11 -0.6
71,617 - MIT1002_00066 0.11 -0.8
71,651 + MIT1002_00066 0.15 -1.9
71,659 + MIT1002_00066 0.16 -1.6
71,659 + MIT1002_00066 0.16 -2.5
71,703 + MIT1002_00066 0.21 -0.7
71,826 - MIT1002_00066 0.35 -1.8
72,019 - MIT1002_00066 0.57 -2.1
72,064 - MIT1002_00066 0.62 -3.2

Or see this region's nucleotide sequence