Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36305

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36295 and QEN71_RS36300 are separated by 116 nucleotidesQEN71_RS36300 and QEN71_RS36305 are separated by 392 nucleotidesQEN71_RS36305 and QEN71_RS36310 are separated by 6 nucleotides QEN71_RS36295: QEN71_RS36295 - DUF1488 family protein, at 1,527,173 to 1,527,441 _RS36295 QEN71_RS36300: QEN71_RS36300 - HU family DNA-binding protein, at 1,527,558 to 1,527,836 _RS36300 QEN71_RS36305: QEN71_RS36305 - IS21-like element helper ATPase IstB, at 1,528,229 to 1,529,017 _RS36305 QEN71_RS36310: QEN71_RS36310 - IS21 family transposase, at 1,529,024 to 1,530,547 _RS36310 Position (kb) 1528 1529 1530Strain fitness (log2 ratio) -2 -1 0 1 2at 1527.267 kb on + strand, within QEN71_RS36295at 1527.559 kb on + strandat 1527.559 kb on + strandat 1527.559 kb on + strandat 1527.560 kb on - strandat 1527.560 kb on - strandat 1527.765 kb on - strand, within QEN71_RS36300at 1527.765 kb on - strand, within QEN71_RS36300at 1527.776 kb on + strand, within QEN71_RS36300at 1527.838 kb on + strandat 1527.838 kb on + strandat 1527.838 kb on + strandat 1527.838 kb on + strandat 1527.838 kb on + strandat 1527.838 kb on + strandat 1527.838 kb on + strandat 1527.839 kb on - strandat 1527.839 kb on - strandat 1527.839 kb on - strandat 1527.856 kb on + strandat 1527.856 kb on + strandat 1528.010 kb on + strandat 1528.010 kb on + strandat 1528.011 kb on - strandat 1528.011 kb on - strandat 1528.049 kb on + strandat 1528.049 kb on + strandat 1528.049 kb on + strandat 1528.088 kb on + strandat 1528.105 kb on + strandat 1528.121 kb on - strandat 1528.121 kb on - strandat 1528.121 kb on - strandat 1528.121 kb on - strandat 1528.121 kb on - strandat 1528.121 kb on - strandat 1528.129 kb on + strandat 1528.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,527,267 + QEN71_RS36295 0.35 +2.1
1,527,559 + -0.4
1,527,559 + -0.8
1,527,559 + +0.4
1,527,560 - +0.3
1,527,560 - -0.2
1,527,765 - QEN71_RS36300 0.74 -0.7
1,527,765 - QEN71_RS36300 0.74 -1.0
1,527,776 + QEN71_RS36300 0.78 +0.6
1,527,838 + -1.7
1,527,838 + -0.7
1,527,838 + -0.1
1,527,838 + +0.2
1,527,838 + +0.4
1,527,838 + +0.0
1,527,838 + +0.9
1,527,839 - +0.4
1,527,839 - -1.2
1,527,839 - +0.6
1,527,856 + -0.4
1,527,856 + +0.3
1,528,010 + -1.2
1,528,010 + -2.2
1,528,011 - -0.1
1,528,011 - -0.5
1,528,049 + +0.1
1,528,049 + -0.3
1,528,049 + +0.6
1,528,088 + +0.0
1,528,105 + -0.6
1,528,121 - +1.5
1,528,121 - -0.1
1,528,121 - -1.4
1,528,121 - -0.4
1,528,121 - -0.6
1,528,121 - -0.4
1,528,129 + -0.3
1,528,130 - +0.9

Or see this region's nucleotide sequence