Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27925

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27915 and QEN71_RS27920 overlap by 4 nucleotidesQEN71_RS27920 and QEN71_RS27925 are separated by 86 nucleotidesQEN71_RS27925 and QEN71_RS27930 overlap by 4 nucleotidesQEN71_RS27930 and QEN71_RS27935 are separated by 42 nucleotides QEN71_RS27915: QEN71_RS27915 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 6,207,854 to 6,208,621 _RS27915 QEN71_RS27920: QEN71_RS27920 - ABC transporter ATP-binding protein, at 6,208,618 to 6,209,439 _RS27920 QEN71_RS27925: QEN71_RS27925 - thiamine phosphate synthase, at 6,209,526 to 6,210,641 _RS27925 QEN71_RS27930: QEN71_RS27930 - thiazole synthase, at 6,210,638 to 6,211,462 _RS27930 QEN71_RS27935: QEN71_RS27935 - sulfur carrier protein ThiS, at 6,211,505 to 6,211,702 _RS27935 Position (kb) 6209 6210 6211Strain fitness (log2 ratio) -2 -1 0 1at 6208.793 kb on + strand, within QEN71_RS27920at 6208.793 kb on + strand, within QEN71_RS27920at 6208.793 kb on + strand, within QEN71_RS27920at 6208.799 kb on + strand, within QEN71_RS27920at 6208.799 kb on + strand, within QEN71_RS27920at 6208.799 kb on + strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.866 kb on + strand, within QEN71_RS27920at 6208.866 kb on + strand, within QEN71_RS27920at 6208.867 kb on - strand, within QEN71_RS27920at 6208.887 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6209.100 kb on + strand, within QEN71_RS27920at 6209.101 kb on - strand, within QEN71_RS27920at 6209.101 kb on - strand, within QEN71_RS27920at 6209.198 kb on + strand, within QEN71_RS27920at 6209.458 kb on - strandat 6209.474 kb on + strandat 6209.474 kb on + strandat 6209.475 kb on - strandat 6209.475 kb on - strandat 6209.475 kb on - strandat 6209.475 kb on - strandat 6209.476 kb on + strandat 6209.476 kb on + strandat 6209.477 kb on - strandat 6209.511 kb on - strandat 6209.547 kb on + strandat 6209.547 kb on + strandat 6209.547 kb on + strandat 6209.547 kb on + strandat 6209.548 kb on - strandat 6209.548 kb on - strandat 6209.557 kb on - strandat 6209.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,208,793 + QEN71_RS27920 0.21 -1.3
6,208,793 + QEN71_RS27920 0.21 +0.0
6,208,793 + QEN71_RS27920 0.21 +0.0
6,208,799 + QEN71_RS27920 0.22 -1.8
6,208,799 + QEN71_RS27920 0.22 +0.0
6,208,799 + QEN71_RS27920 0.22 -1.1
6,208,800 - QEN71_RS27920 0.22 +0.0
6,208,800 - QEN71_RS27920 0.22 +0.0
6,208,800 - QEN71_RS27920 0.22 -0.6
6,208,800 - QEN71_RS27920 0.22 -0.6
6,208,866 + QEN71_RS27920 0.30 -1.7
6,208,866 + QEN71_RS27920 0.30 -0.6
6,208,867 - QEN71_RS27920 0.30 -0.3
6,208,887 + QEN71_RS27920 0.33 -1.8
6,208,937 + QEN71_RS27920 0.39 +0.0
6,208,937 + QEN71_RS27920 0.39 -1.0
6,208,937 + QEN71_RS27920 0.39 -1.1
6,208,937 + QEN71_RS27920 0.39 -1.0
6,208,937 + QEN71_RS27920 0.39 +0.0
6,208,937 + QEN71_RS27920 0.39 -0.8
6,208,937 + QEN71_RS27920 0.39 -2.1
6,208,937 + QEN71_RS27920 0.39 -0.6
6,208,937 + QEN71_RS27920 0.39 +0.0
6,208,938 - QEN71_RS27920 0.39 -1.3
6,208,938 - QEN71_RS27920 0.39 -1.3
6,208,938 - QEN71_RS27920 0.39 -0.6
6,208,938 - QEN71_RS27920 0.39 -1.1
6,208,938 - QEN71_RS27920 0.39 +0.0
6,208,938 - QEN71_RS27920 0.39 -0.3
6,208,938 - QEN71_RS27920 0.39 -0.8
6,208,938 - QEN71_RS27920 0.39 -1.1
6,208,938 - QEN71_RS27920 0.39 +0.2
6,209,100 + QEN71_RS27920 0.59 -0.3
6,209,101 - QEN71_RS27920 0.59 -0.4
6,209,101 - QEN71_RS27920 0.59 +0.0
6,209,198 + QEN71_RS27920 0.71 -1.1
6,209,458 - -0.2
6,209,474 + -0.8
6,209,474 + -1.4
6,209,475 - +0.6
6,209,475 - -1.1
6,209,475 - -0.1
6,209,475 - +0.4
6,209,476 + -0.3
6,209,476 + +0.2
6,209,477 - +0.7
6,209,511 - -0.3
6,209,547 + +0.1
6,209,547 + +0.1
6,209,547 + +0.3
6,209,547 + +0.7
6,209,548 - +0.2
6,209,548 - +0.3
6,209,557 - +0.2
6,209,568 - -1.7

Or see this region's nucleotide sequence