Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23325

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23315 and QEN71_RS23320 are separated by 58 nucleotidesQEN71_RS23320 and QEN71_RS23325 are separated by 134 nucleotidesQEN71_RS23325 and QEN71_RS23330 are separated by 345 nucleotides QEN71_RS23315: QEN71_RS23315 - hypothetical protein, at 5,190,565 to 5,191,029 _RS23315 QEN71_RS23320: QEN71_RS23320 - peroxiredoxin, at 5,191,088 to 5,191,645 _RS23320 QEN71_RS23325: QEN71_RS23325 - EAL domain-containing protein, at 5,191,780 to 5,193,105 _RS23325 QEN71_RS23330: QEN71_RS23330 - sensor domain-containing phosphodiesterase, at 5,193,451 to 5,195,280 _RS23330 Position (kb) 5191 5192 5193 5194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5190.847 kb on - strand, within QEN71_RS23315at 5190.986 kb on + strandat 5190.986 kb on + strandat 5190.987 kb on - strandat 5190.987 kb on - strandat 5190.987 kb on - strandat 5191.023 kb on + strandat 5191.024 kb on - strandat 5191.024 kb on - strandat 5191.037 kb on - strandat 5191.037 kb on - strandat 5191.051 kb on + strandat 5191.051 kb on + strandat 5191.052 kb on - strandat 5191.052 kb on - strandat 5191.052 kb on - strandat 5191.052 kb on - strandat 5191.052 kb on - strandat 5191.089 kb on + strandat 5191.089 kb on + strandat 5191.089 kb on + strandat 5191.090 kb on - strandat 5191.090 kb on - strandat 5191.090 kb on - strandat 5191.090 kb on - strandat 5191.090 kb on - strandat 5191.093 kb on + strandat 5191.093 kb on + strandat 5191.093 kb on + strandat 5191.094 kb on - strandat 5191.094 kb on - strandat 5191.094 kb on - strandat 5191.094 kb on - strandat 5191.094 kb on - strandat 5191.094 kb on - strandat 5191.094 kb on - strandat 5191.164 kb on + strand, within QEN71_RS23320at 5191.164 kb on + strand, within QEN71_RS23320at 5191.165 kb on - strand, within QEN71_RS23320at 5191.165 kb on - strand, within QEN71_RS23320at 5191.165 kb on - strand, within QEN71_RS23320at 5191.165 kb on - strand, within QEN71_RS23320at 5191.170 kb on + strand, within QEN71_RS23320at 5191.170 kb on + strand, within QEN71_RS23320at 5191.170 kb on + strand, within QEN71_RS23320at 5191.171 kb on - strand, within QEN71_RS23320at 5191.171 kb on - strand, within QEN71_RS23320at 5191.192 kb on + strand, within QEN71_RS23320at 5191.192 kb on + strand, within QEN71_RS23320at 5191.193 kb on - strand, within QEN71_RS23320at 5191.193 kb on - strand, within QEN71_RS23320at 5191.200 kb on + strand, within QEN71_RS23320at 5191.200 kb on + strand, within QEN71_RS23320at 5191.201 kb on - strand, within QEN71_RS23320at 5191.201 kb on - strand, within QEN71_RS23320at 5191.201 kb on - strand, within QEN71_RS23320at 5191.201 kb on - strand, within QEN71_RS23320at 5191.201 kb on - strand, within QEN71_RS23320at 5191.201 kb on - strand, within QEN71_RS23320at 5191.249 kb on - strand, within QEN71_RS23320at 5191.371 kb on + strand, within QEN71_RS23320at 5191.372 kb on - strand, within QEN71_RS23320at 5191.372 kb on - strand, within QEN71_RS23320at 5191.380 kb on + strand, within QEN71_RS23320at 5191.380 kb on + strand, within QEN71_RS23320at 5191.381 kb on - strand, within QEN71_RS23320at 5191.381 kb on - strand, within QEN71_RS23320at 5191.381 kb on - strand, within QEN71_RS23320at 5191.447 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.453 kb on - strand, within QEN71_RS23320at 5191.494 kb on + strand, within QEN71_RS23320at 5191.494 kb on + strand, within QEN71_RS23320at 5191.494 kb on + strand, within QEN71_RS23320at 5191.494 kb on + strand, within QEN71_RS23320at 5191.494 kb on + strand, within QEN71_RS23320at 5191.495 kb on - strand, within QEN71_RS23320at 5191.495 kb on - strand, within QEN71_RS23320at 5191.495 kb on - strand, within QEN71_RS23320at 5191.495 kb on - strand, within QEN71_RS23320at 5191.495 kb on - strand, within QEN71_RS23320at 5191.495 kb on - strand, within QEN71_RS23320at 5191.495 kb on - strand, within QEN71_RS23320at 5191.500 kb on + strand, within QEN71_RS23320at 5191.500 kb on + strand, within QEN71_RS23320at 5191.500 kb on + strand, within QEN71_RS23320at 5191.500 kb on + strand, within QEN71_RS23320at 5191.500 kb on + strand, within QEN71_RS23320at 5191.500 kb on + strand, within QEN71_RS23320at 5191.501 kb on - strand, within QEN71_RS23320at 5191.501 kb on - strand, within QEN71_RS23320at 5191.501 kb on - strand, within QEN71_RS23320at 5191.675 kb on + strandat 5191.741 kb on + strandat 5191.742 kb on - strandat 5192.193 kb on - strand, within QEN71_RS23325at 5192.193 kb on - strand, within QEN71_RS23325at 5192.265 kb on + strand, within QEN71_RS23325at 5192.459 kb on + strand, within QEN71_RS23325at 5192.460 kb on - strand, within QEN71_RS23325at 5192.460 kb on - strand, within QEN71_RS23325at 5192.639 kb on + strand, within QEN71_RS23325at 5192.639 kb on + strand, within QEN71_RS23325at 5192.640 kb on - strand, within QEN71_RS23325at 5192.718 kb on + strand, within QEN71_RS23325at 5192.719 kb on - strand, within QEN71_RS23325at 5192.925 kb on - strand, within QEN71_RS23325at 5192.925 kb on - strand, within QEN71_RS23325at 5192.957 kb on + strand, within QEN71_RS23325at 5192.957 kb on + strand, within QEN71_RS23325at 5192.957 kb on + strand, within QEN71_RS23325at 5192.957 kb on + strand, within QEN71_RS23325at 5192.958 kb on - strand, within QEN71_RS23325at 5192.958 kb on - strand, within QEN71_RS23325at 5192.958 kb on - strand, within QEN71_RS23325at 5193.005 kb on + strandat 5193.005 kb on + strandat 5193.005 kb on + strandat 5193.006 kb on - strandat 5193.006 kb on - strandat 5193.006 kb on - strandat 5193.006 kb on - strandat 5193.006 kb on - strandat 5193.093 kb on - strandat 5193.159 kb on + strandat 5193.159 kb on + strandat 5193.159 kb on + strandat 5193.160 kb on - strandat 5193.160 kb on - strandat 5193.160 kb on - strandat 5193.160 kb on - strandat 5193.225 kb on + strandat 5193.225 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.261 kb on + strandat 5193.262 kb on - strandat 5193.262 kb on - strandat 5193.262 kb on - strandat 5193.262 kb on - strandat 5193.262 kb on - strandat 5193.262 kb on - strandat 5193.289 kb on + strandat 5193.289 kb on + strandat 5193.289 kb on + strandat 5193.289 kb on + strandat 5193.289 kb on + strandat 5193.289 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.294 kb on + strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.295 kb on - strandat 5193.299 kb on + strandat 5193.299 kb on + strandat 5193.299 kb on + strandat 5193.300 kb on - strandat 5193.300 kb on - strandat 5193.311 kb on + strandat 5193.311 kb on + strandat 5193.311 kb on + strandat 5193.312 kb on - strandat 5193.312 kb on - strandat 5193.318 kb on - strandat 5193.318 kb on - strandat 5193.318 kb on - strandat 5193.446 kb on + strandat 5193.446 kb on + strandat 5193.446 kb on + strandat 5193.446 kb on + strandat 5193.447 kb on - strandat 5193.447 kb on - strandat 5193.447 kb on - strandat 5193.447 kb on - strandat 5193.447 kb on - strandat 5193.640 kb on + strand, within QEN71_RS23330at 5193.640 kb on + strand, within QEN71_RS23330at 5193.640 kb on + strand, within QEN71_RS23330at 5193.640 kb on + strand, within QEN71_RS23330at 5193.641 kb on - strand, within QEN71_RS23330at 5193.641 kb on - strand, within QEN71_RS23330at 5193.641 kb on - strand, within QEN71_RS23330at 5193.685 kb on + strand, within QEN71_RS23330at 5193.685 kb on + strand, within QEN71_RS23330at 5193.686 kb on - strand, within QEN71_RS23330at 5193.686 kb on - strand, within QEN71_RS23330at 5193.686 kb on - strand, within QEN71_RS23330at 5193.818 kb on - strand, within QEN71_RS23330at 5193.874 kb on + strand, within QEN71_RS23330at 5193.874 kb on + strand, within QEN71_RS23330at 5193.874 kb on + strand, within QEN71_RS23330at 5193.874 kb on + strand, within QEN71_RS23330at 5194.017 kb on + strand, within QEN71_RS23330at 5194.063 kb on + strand, within QEN71_RS23330at 5194.063 kb on + strand, within QEN71_RS23330at 5194.064 kb on - strand, within QEN71_RS23330at 5194.064 kb on - strand, within QEN71_RS23330at 5194.090 kb on + strand, within QEN71_RS23330

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,190,847 - QEN71_RS23315 0.61 -0.4
5,190,986 + +0.7
5,190,986 + -0.4
5,190,987 - -0.2
5,190,987 - -1.0
5,190,987 - -0.1
5,191,023 + -0.3
5,191,024 - -0.9
5,191,024 - -0.2
5,191,037 - -0.4
5,191,037 - -2.3
5,191,051 + -1.6
5,191,051 + -0.1
5,191,052 - +0.3
5,191,052 - -0.6
5,191,052 - -0.2
5,191,052 - +1.0
5,191,052 - +0.7
5,191,089 + -0.6
5,191,089 + +1.0
5,191,089 + +0.1
5,191,090 - -1.0
5,191,090 - -0.2
5,191,090 - -0.9
5,191,090 - -0.4
5,191,090 - +1.1
5,191,093 + -1.0
5,191,093 + +1.3
5,191,093 + +0.3
5,191,094 - +0.0
5,191,094 - -0.6
5,191,094 - -0.4
5,191,094 - -0.4
5,191,094 - -2.6
5,191,094 - -1.9
5,191,094 - -1.1
5,191,164 + QEN71_RS23320 0.14 -0.8
5,191,164 + QEN71_RS23320 0.14 -0.4
5,191,165 - QEN71_RS23320 0.14 +0.4
5,191,165 - QEN71_RS23320 0.14 -0.0
5,191,165 - QEN71_RS23320 0.14 -2.5
5,191,165 - QEN71_RS23320 0.14 +0.1
5,191,170 + QEN71_RS23320 0.15 -0.3
5,191,170 + QEN71_RS23320 0.15 -0.9
5,191,170 + QEN71_RS23320 0.15 +0.1
5,191,171 - QEN71_RS23320 0.15 -0.3
5,191,171 - QEN71_RS23320 0.15 -1.4
5,191,192 + QEN71_RS23320 0.19 -0.7
5,191,192 + QEN71_RS23320 0.19 +0.4
5,191,193 - QEN71_RS23320 0.19 -0.8
5,191,193 - QEN71_RS23320 0.19 -1.7
5,191,200 + QEN71_RS23320 0.20 +1.3
5,191,200 + QEN71_RS23320 0.20 -0.3
5,191,201 - QEN71_RS23320 0.20 +0.2
5,191,201 - QEN71_RS23320 0.20 -0.2
5,191,201 - QEN71_RS23320 0.20 +1.1
5,191,201 - QEN71_RS23320 0.20 -2.9
5,191,201 - QEN71_RS23320 0.20 +0.9
5,191,201 - QEN71_RS23320 0.20 +0.4
5,191,249 - QEN71_RS23320 0.29 -0.2
5,191,371 + QEN71_RS23320 0.51 +0.3
5,191,372 - QEN71_RS23320 0.51 -0.5
5,191,372 - QEN71_RS23320 0.51 -2.1
5,191,380 + QEN71_RS23320 0.52 +0.1
5,191,380 + QEN71_RS23320 0.52 -1.7
5,191,381 - QEN71_RS23320 0.53 -0.7
5,191,381 - QEN71_RS23320 0.53 -0.5
5,191,381 - QEN71_RS23320 0.53 -1.0
5,191,447 - QEN71_RS23320 0.64 -0.4
5,191,453 - QEN71_RS23320 0.65 -0.0
5,191,453 - QEN71_RS23320 0.65 -0.4
5,191,453 - QEN71_RS23320 0.65 -0.4
5,191,453 - QEN71_RS23320 0.65 +1.3
5,191,453 - QEN71_RS23320 0.65 +1.2
5,191,453 - QEN71_RS23320 0.65 -1.5
5,191,453 - QEN71_RS23320 0.65 -1.0
5,191,453 - QEN71_RS23320 0.65 -1.4
5,191,494 + QEN71_RS23320 0.73 -0.5
5,191,494 + QEN71_RS23320 0.73 +0.2
5,191,494 + QEN71_RS23320 0.73 +2.0
5,191,494 + QEN71_RS23320 0.73 +0.4
5,191,494 + QEN71_RS23320 0.73 -1.6
5,191,495 - QEN71_RS23320 0.73 -1.3
5,191,495 - QEN71_RS23320 0.73 -0.6
5,191,495 - QEN71_RS23320 0.73 -0.7
5,191,495 - QEN71_RS23320 0.73 +1.0
5,191,495 - QEN71_RS23320 0.73 -0.0
5,191,495 - QEN71_RS23320 0.73 -0.8
5,191,495 - QEN71_RS23320 0.73 -1.2
5,191,500 + QEN71_RS23320 0.74 -1.1
5,191,500 + QEN71_RS23320 0.74 +0.2
5,191,500 + QEN71_RS23320 0.74 +0.6
5,191,500 + QEN71_RS23320 0.74 -1.2
5,191,500 + QEN71_RS23320 0.74 +0.4
5,191,500 + QEN71_RS23320 0.74 -0.9
5,191,501 - QEN71_RS23320 0.74 -1.1
5,191,501 - QEN71_RS23320 0.74 -1.0
5,191,501 - QEN71_RS23320 0.74 +0.2
5,191,675 + -1.9
5,191,741 + -1.2
5,191,742 - +1.5
5,192,193 - QEN71_RS23325 0.31 -1.7
5,192,193 - QEN71_RS23325 0.31 -2.3
5,192,265 + QEN71_RS23325 0.37 -0.5
5,192,459 + QEN71_RS23325 0.51 -1.1
5,192,460 - QEN71_RS23325 0.51 +0.2
5,192,460 - QEN71_RS23325 0.51 -0.6
5,192,639 + QEN71_RS23325 0.65 +0.4
5,192,639 + QEN71_RS23325 0.65 +0.1
5,192,640 - QEN71_RS23325 0.65 -0.1
5,192,718 + QEN71_RS23325 0.71 +0.0
5,192,719 - QEN71_RS23325 0.71 -1.0
5,192,925 - QEN71_RS23325 0.86 +0.1
5,192,925 - QEN71_RS23325 0.86 +1.4
5,192,957 + QEN71_RS23325 0.89 -1.6
5,192,957 + QEN71_RS23325 0.89 +0.2
5,192,957 + QEN71_RS23325 0.89 -0.3
5,192,957 + QEN71_RS23325 0.89 +0.2
5,192,958 - QEN71_RS23325 0.89 +2.0
5,192,958 - QEN71_RS23325 0.89 +0.6
5,192,958 - QEN71_RS23325 0.89 -2.1
5,193,005 + +0.2
5,193,005 + -0.1
5,193,005 + +0.0
5,193,006 - +1.2
5,193,006 - -0.4
5,193,006 - +0.4
5,193,006 - +0.2
5,193,006 - -1.5
5,193,093 - -0.2
5,193,159 + +0.5
5,193,159 + -0.6
5,193,159 + -0.2
5,193,160 - -2.3
5,193,160 - -0.0
5,193,160 - -0.7
5,193,160 - -1.2
5,193,225 + +0.6
5,193,225 + -0.5
5,193,261 + +1.6
5,193,261 + -0.1
5,193,261 + +1.2
5,193,261 + -0.5
5,193,261 + -0.2
5,193,261 + -1.1
5,193,261 + +1.2
5,193,261 + -0.2
5,193,261 + -0.3
5,193,261 + +0.8
5,193,261 + -0.0
5,193,262 - +0.0
5,193,262 - -1.5
5,193,262 - +1.0
5,193,262 - -0.0
5,193,262 - -0.2
5,193,262 - +1.0
5,193,289 + -0.5
5,193,289 + +1.0
5,193,289 + -1.3
5,193,289 + -0.2
5,193,289 + +0.5
5,193,289 + +0.7
5,193,294 + -0.3
5,193,294 + +2.0
5,193,294 + -0.4
5,193,294 + -0.6
5,193,294 + +0.8
5,193,294 + -1.2
5,193,294 + +2.2
5,193,294 + -0.5
5,193,294 + +0.5
5,193,294 + +0.1
5,193,294 + +0.4
5,193,294 + +1.2
5,193,294 + +0.1
5,193,294 + +0.3
5,193,294 + +0.1
5,193,295 - -0.1
5,193,295 - +1.0
5,193,295 - -1.5
5,193,295 - -0.2
5,193,295 - +1.2
5,193,295 - -0.8
5,193,295 - -0.4
5,193,295 - -0.2
5,193,295 - +0.4
5,193,295 - +0.1
5,193,295 - -0.6
5,193,295 - +0.6
5,193,299 + -0.3
5,193,299 + +0.6
5,193,299 + -1.9
5,193,300 - +0.6
5,193,300 - +0.4
5,193,311 + -1.2
5,193,311 + -1.7
5,193,311 + -0.6
5,193,312 - -0.3
5,193,312 - -0.0
5,193,318 - -0.0
5,193,318 - -0.0
5,193,318 - +1.0
5,193,446 + +0.6
5,193,446 + -1.2
5,193,446 + +0.4
5,193,446 + +0.1
5,193,447 - -0.3
5,193,447 - -0.6
5,193,447 - +0.4
5,193,447 - +1.6
5,193,447 - -0.9
5,193,640 + QEN71_RS23330 0.10 -0.6
5,193,640 + QEN71_RS23330 0.10 -0.1
5,193,640 + QEN71_RS23330 0.10 +0.2
5,193,640 + QEN71_RS23330 0.10 +1.2
5,193,641 - QEN71_RS23330 0.10 -0.7
5,193,641 - QEN71_RS23330 0.10 +0.1
5,193,641 - QEN71_RS23330 0.10 +0.4
5,193,685 + QEN71_RS23330 0.13 -0.5
5,193,685 + QEN71_RS23330 0.13 +1.0
5,193,686 - QEN71_RS23330 0.13 +0.4
5,193,686 - QEN71_RS23330 0.13 -2.6
5,193,686 - QEN71_RS23330 0.13 -0.1
5,193,818 - QEN71_RS23330 0.20 +0.7
5,193,874 + QEN71_RS23330 0.23 -1.0
5,193,874 + QEN71_RS23330 0.23 +1.0
5,193,874 + QEN71_RS23330 0.23 +0.2
5,193,874 + QEN71_RS23330 0.23 -0.2
5,194,017 + QEN71_RS23330 0.31 +0.7
5,194,063 + QEN71_RS23330 0.33 -0.3
5,194,063 + QEN71_RS23330 0.33 -0.4
5,194,064 - QEN71_RS23330 0.33 +0.1
5,194,064 - QEN71_RS23330 0.33 -0.0
5,194,090 + QEN71_RS23330 0.35 -0.8

Or see this region's nucleotide sequence