Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19825

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19815 and QEN71_RS19820 are separated by 22 nucleotidesQEN71_RS19820 and QEN71_RS19825 are separated by 40 nucleotidesQEN71_RS19825 and QEN71_RS19830 are separated by 21 nucleotides QEN71_RS19815: QEN71_RS19815 - TIGR00366 family protein, at 4,414,300 to 4,415,667 _RS19815 QEN71_RS19820: QEN71_RS19820 - amidohydrolase family protein, at 4,415,690 to 4,416,499 _RS19820 QEN71_RS19825: QEN71_RS19825 - CoA transferase, at 4,416,540 to 4,417,730 _RS19825 QEN71_RS19830: QEN71_RS19830 - CoA ester lyase, at 4,417,752 to 4,418,645 _RS19830 Position (kb) 4416 4417 4418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4415.706 kb on + strandat 4415.932 kb on - strand, within QEN71_RS19820at 4416.195 kb on + strand, within QEN71_RS19820at 4416.196 kb on - strand, within QEN71_RS19820at 4416.346 kb on - strand, within QEN71_RS19820at 4416.346 kb on - strand, within QEN71_RS19820at 4416.471 kb on + strandat 4416.471 kb on + strandat 4416.471 kb on + strandat 4416.471 kb on + strandat 4416.471 kb on + strandat 4416.472 kb on - strandat 4416.520 kb on + strandat 4416.911 kb on - strand, within QEN71_RS19825at 4416.991 kb on + strand, within QEN71_RS19825at 4416.991 kb on + strand, within QEN71_RS19825at 4416.991 kb on + strand, within QEN71_RS19825at 4416.997 kb on + strand, within QEN71_RS19825at 4417.135 kb on + strand, within QEN71_RS19825at 4417.136 kb on - strand, within QEN71_RS19825at 4417.228 kb on + strand, within QEN71_RS19825at 4417.228 kb on + strand, within QEN71_RS19825at 4417.357 kb on + strand, within QEN71_RS19825at 4417.358 kb on - strand, within QEN71_RS19825at 4417.573 kb on + strand, within QEN71_RS19825at 4417.574 kb on - strand, within QEN71_RS19825at 4417.651 kb on + strandat 4417.664 kb on + strandat 4417.666 kb on + strandat 4417.667 kb on - strandat 4417.723 kb on + strandat 4417.724 kb on - strandat 4417.724 kb on - strandat 4417.753 kb on + strandat 4417.870 kb on + strand, within QEN71_RS19830at 4417.870 kb on + strand, within QEN71_RS19830at 4417.871 kb on - strand, within QEN71_RS19830at 4417.871 kb on - strand, within QEN71_RS19830at 4418.083 kb on + strand, within QEN71_RS19830at 4418.667 kb on + strandat 4418.681 kb on + strandat 4418.681 kb on + strandat 4418.682 kb on - strandat 4418.682 kb on - strandat 4418.718 kb on - strandat 4418.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,415,706 + +0.7
4,415,932 - QEN71_RS19820 0.30 +0.7
4,416,195 + QEN71_RS19820 0.62 -0.6
4,416,196 - QEN71_RS19820 0.62 -0.7
4,416,346 - QEN71_RS19820 0.81 -0.4
4,416,346 - QEN71_RS19820 0.81 +0.2
4,416,471 + -0.1
4,416,471 + -1.0
4,416,471 + +0.9
4,416,471 + +0.2
4,416,471 + -0.9
4,416,472 - -1.1
4,416,520 + +0.0
4,416,911 - QEN71_RS19825 0.31 -0.6
4,416,991 + QEN71_RS19825 0.38 -0.5
4,416,991 + QEN71_RS19825 0.38 +0.3
4,416,991 + QEN71_RS19825 0.38 +1.1
4,416,997 + QEN71_RS19825 0.38 -1.3
4,417,135 + QEN71_RS19825 0.50 -0.6
4,417,136 - QEN71_RS19825 0.50 -0.1
4,417,228 + QEN71_RS19825 0.58 +0.8
4,417,228 + QEN71_RS19825 0.58 -0.4
4,417,357 + QEN71_RS19825 0.69 -0.1
4,417,358 - QEN71_RS19825 0.69 -0.4
4,417,573 + QEN71_RS19825 0.87 -3.1
4,417,574 - QEN71_RS19825 0.87 +1.9
4,417,651 + +1.1
4,417,664 + -1.0
4,417,666 + -0.5
4,417,667 - +0.1
4,417,723 + +0.6
4,417,724 - -0.9
4,417,724 - -2.5
4,417,753 + -2.2
4,417,870 + QEN71_RS19830 0.13 +0.1
4,417,870 + QEN71_RS19830 0.13 +0.6
4,417,871 - QEN71_RS19830 0.13 -0.9
4,417,871 - QEN71_RS19830 0.13 +1.7
4,418,083 + QEN71_RS19830 0.37 -1.3
4,418,667 + -0.6
4,418,681 + -0.5
4,418,681 + -0.7
4,418,682 - +0.2
4,418,682 - +0.2
4,418,718 - -0.8
4,418,718 - -0.2

Or see this region's nucleotide sequence