Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12595

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12585 and QEN71_RS12590 are separated by 70 nucleotidesQEN71_RS12590 and QEN71_RS12595 are separated by 446 nucleotidesQEN71_RS12595 and QEN71_RS12600 are separated by 73 nucleotides QEN71_RS12585: QEN71_RS12585 - dihydrodipicolinate synthase family protein, at 2,816,552 to 2,817,484 _RS12585 QEN71_RS12590: QEN71_RS12590 - hypothetical protein, at 2,817,555 to 2,817,776 _RS12590 QEN71_RS12595: QEN71_RS12595 - response regulator transcription factor, at 2,818,223 to 2,818,876 _RS12595 QEN71_RS12600: QEN71_RS12600 - rhamnose ABC transporter substrate-binding protein, at 2,818,950 to 2,819,957 _RS12600 Position (kb) 2818 2819Strain fitness (log2 ratio) -2 -1 0 1at 2817.288 kb on + strand, within QEN71_RS12585at 2817.289 kb on - strand, within QEN71_RS12585at 2818.101 kb on + strandat 2818.501 kb on + strand, within QEN71_RS12595at 2818.502 kb on - strand, within QEN71_RS12595at 2818.851 kb on - strandat 2819.110 kb on + strand, within QEN71_RS12600at 2819.252 kb on - strand, within QEN71_RS12600at 2819.252 kb on - strand, within QEN71_RS12600at 2819.252 kb on - strand, within QEN71_RS12600at 2819.398 kb on + strand, within QEN71_RS12600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,817,288 + QEN71_RS12585 0.79 -1.0
2,817,289 - QEN71_RS12585 0.79 -1.8
2,818,101 + -0.3
2,818,501 + QEN71_RS12595 0.43 -0.6
2,818,502 - QEN71_RS12595 0.43 -0.4
2,818,851 - +0.8
2,819,110 + QEN71_RS12600 0.16 -1.0
2,819,252 - QEN71_RS12600 0.30 -1.6
2,819,252 - QEN71_RS12600 0.30 +0.3
2,819,252 - QEN71_RS12600 0.30 -0.4
2,819,398 + QEN71_RS12600 0.44 -2.7

Or see this region's nucleotide sequence