Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11820

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11810 and QEN71_RS11815 are separated by 11 nucleotidesQEN71_RS11815 and QEN71_RS11820 overlap by 1 nucleotidesQEN71_RS11820 and QEN71_RS11825 overlap by 4 nucleotides QEN71_RS11810: QEN71_RS11810 - LLM class flavin-dependent oxidoreductase, at 2,630,031 to 2,631,107 _RS11810 QEN71_RS11815: QEN71_RS11815 - class II aldolase/adducin family protein, at 2,631,119 to 2,631,934 _RS11815 QEN71_RS11820: QEN71_RS11820 - cysteine dioxygenase, at 2,631,934 to 2,632,530 _RS11820 QEN71_RS11825: QEN71_RS11825 - rhodanese-related sulfurtransferase, at 2,632,527 to 2,634,134 _RS11825 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2630.980 kb on - strand, within QEN71_RS11810at 2631.028 kb on + strandat 2631.045 kb on + strandat 2631.307 kb on + strand, within QEN71_RS11815at 2631.307 kb on + strand, within QEN71_RS11815at 2631.525 kb on - strand, within QEN71_RS11815at 2631.638 kb on - strand, within QEN71_RS11815at 2631.749 kb on + strand, within QEN71_RS11815at 2631.749 kb on + strand, within QEN71_RS11815at 2631.750 kb on - strand, within QEN71_RS11815at 2631.893 kb on + strandat 2631.894 kb on - strandat 2632.099 kb on + strand, within QEN71_RS11820at 2632.140 kb on + strand, within QEN71_RS11820at 2632.140 kb on + strand, within QEN71_RS11820at 2632.364 kb on - strand, within QEN71_RS11820at 2632.432 kb on + strand, within QEN71_RS11820at 2632.461 kb on + strand, within QEN71_RS11820at 2632.551 kb on + strandat 2632.552 kb on - strandat 2632.686 kb on + strandat 2632.686 kb on + strandat 2632.687 kb on - strandat 2632.861 kb on + strand, within QEN71_RS11825at 2632.861 kb on + strand, within QEN71_RS11825at 2632.862 kb on - strand, within QEN71_RS11825at 2632.862 kb on - strand, within QEN71_RS11825at 2633.006 kb on + strand, within QEN71_RS11825at 2633.379 kb on + strand, within QEN71_RS11825at 2633.380 kb on - strand, within QEN71_RS11825

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,630,980 - QEN71_RS11810 0.88 -1.2
2,631,028 + +0.3
2,631,045 + +1.4
2,631,307 + QEN71_RS11815 0.23 +2.1
2,631,307 + QEN71_RS11815 0.23 +0.3
2,631,525 - QEN71_RS11815 0.50 -1.1
2,631,638 - QEN71_RS11815 0.64 +0.1
2,631,749 + QEN71_RS11815 0.77 +0.1
2,631,749 + QEN71_RS11815 0.77 +1.5
2,631,750 - QEN71_RS11815 0.77 +1.1
2,631,893 + +1.1
2,631,894 - -0.1
2,632,099 + QEN71_RS11820 0.28 +1.9
2,632,140 + QEN71_RS11820 0.35 -0.2
2,632,140 + QEN71_RS11820 0.35 +0.3
2,632,364 - QEN71_RS11820 0.72 -0.2
2,632,432 + QEN71_RS11820 0.83 +0.1
2,632,461 + QEN71_RS11820 0.88 +1.4
2,632,551 + -0.9
2,632,552 - -1.0
2,632,686 + -0.1
2,632,686 + -0.5
2,632,687 - +0.6
2,632,861 + QEN71_RS11825 0.21 -0.9
2,632,861 + QEN71_RS11825 0.21 -3.3
2,632,862 - QEN71_RS11825 0.21 -0.9
2,632,862 - QEN71_RS11825 0.21 +0.4
2,633,006 + QEN71_RS11825 0.30 -0.9
2,633,379 + QEN71_RS11825 0.53 +0.6
2,633,380 - QEN71_RS11825 0.53 +0.5

Or see this region's nucleotide sequence