Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07790

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07785 and QEN71_RS07790 are separated by 54 nucleotidesQEN71_RS07790 and QEN71_RS07795 are separated by 248 nucleotides QEN71_RS07785: QEN71_RS07785 - FAD-binding oxidoreductase, at 1,724,391 to 1,725,791 _RS07785 QEN71_RS07790: QEN71_RS07790 - GMC family oxidoreductase N-terminal domain-containing protein, at 1,725,846 to 1,729,244 _RS07790 QEN71_RS07795: QEN71_RS07795 - hypothetical protein, at 1,729,493 to 1,730,305 _RS07795 Position (kb) 1725 1726 1727 1728 1729 1730Strain fitness (log2 ratio) -2 -1 0 1 2at 1724.976 kb on + strand, within QEN71_RS07785at 1724.977 kb on - strand, within QEN71_RS07785at 1725.525 kb on + strand, within QEN71_RS07785at 1725.525 kb on + strand, within QEN71_RS07785at 1725.526 kb on - strand, within QEN71_RS07785at 1725.608 kb on - strand, within QEN71_RS07785at 1725.609 kb on + strand, within QEN71_RS07785at 1725.610 kb on - strand, within QEN71_RS07785at 1725.790 kb on - strandat 1725.952 kb on + strandat 1726.015 kb on + strandat 1726.080 kb on - strandat 1726.080 kb on - strandat 1726.080 kb on - strandat 1726.080 kb on - strandat 1726.082 kb on - strandat 1726.170 kb on + strandat 1726.171 kb on - strandat 1726.344 kb on - strand, within QEN71_RS07790at 1726.344 kb on - strand, within QEN71_RS07790at 1726.345 kb on + strand, within QEN71_RS07790at 1726.391 kb on + strand, within QEN71_RS07790at 1726.395 kb on + strand, within QEN71_RS07790at 1726.395 kb on + strand, within QEN71_RS07790at 1726.396 kb on - strand, within QEN71_RS07790at 1726.834 kb on + strand, within QEN71_RS07790at 1726.901 kb on - strand, within QEN71_RS07790at 1726.937 kb on - strand, within QEN71_RS07790at 1726.937 kb on - strand, within QEN71_RS07790at 1726.976 kb on - strand, within QEN71_RS07790at 1727.123 kb on + strand, within QEN71_RS07790at 1727.124 kb on - strand, within QEN71_RS07790at 1727.185 kb on + strand, within QEN71_RS07790at 1727.225 kb on - strand, within QEN71_RS07790at 1727.339 kb on + strand, within QEN71_RS07790at 1727.471 kb on - strand, within QEN71_RS07790at 1727.668 kb on + strand, within QEN71_RS07790at 1727.668 kb on + strand, within QEN71_RS07790at 1727.668 kb on + strand, within QEN71_RS07790at 1727.669 kb on - strand, within QEN71_RS07790at 1727.830 kb on + strand, within QEN71_RS07790at 1727.831 kb on - strand, within QEN71_RS07790at 1727.831 kb on - strand, within QEN71_RS07790at 1727.831 kb on - strand, within QEN71_RS07790at 1727.831 kb on - strand, within QEN71_RS07790at 1727.885 kb on - strand, within QEN71_RS07790at 1728.460 kb on + strand, within QEN71_RS07790at 1728.461 kb on - strand, within QEN71_RS07790at 1728.590 kb on - strand, within QEN71_RS07790at 1728.590 kb on - strand, within QEN71_RS07790at 1728.722 kb on - strand, within QEN71_RS07790at 1728.839 kb on - strand, within QEN71_RS07790at 1729.045 kb on + strandat 1729.045 kb on + strandat 1729.045 kb on + strandat 1729.045 kb on + strandat 1729.046 kb on - strandat 1729.046 kb on - strandat 1729.174 kb on + strandat 1729.201 kb on + strandat 1729.202 kb on - strandat 1729.202 kb on - strandat 1729.259 kb on + strandat 1729.260 kb on - strandat 1729.260 kb on - strandat 1729.260 kb on - strandat 1729.260 kb on - strandat 1729.261 kb on + strandat 1729.262 kb on - strandat 1729.262 kb on - strandat 1729.327 kb on + strandat 1729.327 kb on + strandat 1729.485 kb on + strandat 1729.486 kb on - strandat 1729.716 kb on + strand, within QEN71_RS07795at 1729.716 kb on + strand, within QEN71_RS07795at 1729.716 kb on + strand, within QEN71_RS07795at 1729.716 kb on + strand, within QEN71_RS07795at 1729.716 kb on + strand, within QEN71_RS07795at 1729.854 kb on + strand, within QEN71_RS07795at 1729.854 kb on + strand, within QEN71_RS07795at 1729.854 kb on + strand, within QEN71_RS07795at 1729.855 kb on - strand, within QEN71_RS07795at 1729.855 kb on - strand, within QEN71_RS07795at 1729.855 kb on - strand, within QEN71_RS07795at 1730.002 kb on - strand, within QEN71_RS07795at 1730.013 kb on + strand, within QEN71_RS07795at 1730.013 kb on + strand, within QEN71_RS07795at 1730.013 kb on + strand, within QEN71_RS07795at 1730.013 kb on + strand, within QEN71_RS07795at 1730.014 kb on - strand, within QEN71_RS07795at 1730.028 kb on + strand, within QEN71_RS07795at 1730.029 kb on - strand, within QEN71_RS07795at 1730.101 kb on + strand, within QEN71_RS07795at 1730.101 kb on + strand, within QEN71_RS07795at 1730.103 kb on + strand, within QEN71_RS07795at 1730.103 kb on + strand, within QEN71_RS07795at 1730.103 kb on + strand, within QEN71_RS07795at 1730.104 kb on - strand, within QEN71_RS07795at 1730.104 kb on - strand, within QEN71_RS07795at 1730.104 kb on - strand, within QEN71_RS07795at 1730.166 kb on + strand, within QEN71_RS07795at 1730.166 kb on + strand, within QEN71_RS07795at 1730.166 kb on + strand, within QEN71_RS07795at 1730.166 kb on + strand, within QEN71_RS07795at 1730.166 kb on + strand, within QEN71_RS07795at 1730.167 kb on - strand, within QEN71_RS07795at 1730.196 kb on + strand, within QEN71_RS07795at 1730.196 kb on + strand, within QEN71_RS07795at 1730.196 kb on + strand, within QEN71_RS07795at 1730.196 kb on + strand, within QEN71_RS07795at 1730.197 kb on - strand, within QEN71_RS07795

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,724,976 + QEN71_RS07785 0.42 -0.6
1,724,977 - QEN71_RS07785 0.42 -0.4
1,725,525 + QEN71_RS07785 0.81 -0.3
1,725,525 + QEN71_RS07785 0.81 +0.5
1,725,526 - QEN71_RS07785 0.81 -0.1
1,725,608 - QEN71_RS07785 0.87 -0.9
1,725,609 + QEN71_RS07785 0.87 -0.4
1,725,610 - QEN71_RS07785 0.87 -0.7
1,725,790 - -0.1
1,725,952 + -0.1
1,726,015 + -0.5
1,726,080 - +1.0
1,726,080 - -0.4
1,726,080 - +0.3
1,726,080 - -0.7
1,726,082 - +0.1
1,726,170 + +0.4
1,726,171 - -0.8
1,726,344 - QEN71_RS07790 0.15 +0.3
1,726,344 - QEN71_RS07790 0.15 -1.2
1,726,345 + QEN71_RS07790 0.15 -0.5
1,726,391 + QEN71_RS07790 0.16 -0.2
1,726,395 + QEN71_RS07790 0.16 -2.0
1,726,395 + QEN71_RS07790 0.16 +0.5
1,726,396 - QEN71_RS07790 0.16 -0.2
1,726,834 + QEN71_RS07790 0.29 -2.1
1,726,901 - QEN71_RS07790 0.31 -0.5
1,726,937 - QEN71_RS07790 0.32 -0.7
1,726,937 - QEN71_RS07790 0.32 +2.2
1,726,976 - QEN71_RS07790 0.33 +0.3
1,727,123 + QEN71_RS07790 0.38 +0.5
1,727,124 - QEN71_RS07790 0.38 +0.8
1,727,185 + QEN71_RS07790 0.39 +0.1
1,727,225 - QEN71_RS07790 0.41 -1.4
1,727,339 + QEN71_RS07790 0.44 -2.0
1,727,471 - QEN71_RS07790 0.48 +1.6
1,727,668 + QEN71_RS07790 0.54 -1.3
1,727,668 + QEN71_RS07790 0.54 +0.1
1,727,668 + QEN71_RS07790 0.54 -0.1
1,727,669 - QEN71_RS07790 0.54 -0.2
1,727,830 + QEN71_RS07790 0.58 +0.8
1,727,831 - QEN71_RS07790 0.58 +0.1
1,727,831 - QEN71_RS07790 0.58 -0.0
1,727,831 - QEN71_RS07790 0.58 -0.7
1,727,831 - QEN71_RS07790 0.58 -0.2
1,727,885 - QEN71_RS07790 0.60 -1.0
1,728,460 + QEN71_RS07790 0.77 -0.1
1,728,461 - QEN71_RS07790 0.77 +0.2
1,728,590 - QEN71_RS07790 0.81 -0.3
1,728,590 - QEN71_RS07790 0.81 -2.0
1,728,722 - QEN71_RS07790 0.85 +0.7
1,728,839 - QEN71_RS07790 0.88 +0.1
1,729,045 + +0.1
1,729,045 + -0.5
1,729,045 + +0.5
1,729,045 + -0.3
1,729,046 - -1.9
1,729,046 - +0.3
1,729,174 + -1.4
1,729,201 + -1.2
1,729,202 - +0.2
1,729,202 - -0.4
1,729,259 + +0.4
1,729,260 - +0.4
1,729,260 - -0.7
1,729,260 - -0.1
1,729,260 - -0.4
1,729,261 + +0.9
1,729,262 - -0.4
1,729,262 - -0.0
1,729,327 + -0.4
1,729,327 + +0.0
1,729,485 + +0.7
1,729,486 - -1.5
1,729,716 + QEN71_RS07795 0.27 -0.5
1,729,716 + QEN71_RS07795 0.27 -1.1
1,729,716 + QEN71_RS07795 0.27 -0.9
1,729,716 + QEN71_RS07795 0.27 -1.5
1,729,716 + QEN71_RS07795 0.27 +0.6
1,729,854 + QEN71_RS07795 0.44 -0.1
1,729,854 + QEN71_RS07795 0.44 -0.4
1,729,854 + QEN71_RS07795 0.44 +0.2
1,729,855 - QEN71_RS07795 0.45 -0.5
1,729,855 - QEN71_RS07795 0.45 -0.4
1,729,855 - QEN71_RS07795 0.45 -0.4
1,730,002 - QEN71_RS07795 0.63 -0.4
1,730,013 + QEN71_RS07795 0.64 -0.4
1,730,013 + QEN71_RS07795 0.64 +0.5
1,730,013 + QEN71_RS07795 0.64 +1.2
1,730,013 + QEN71_RS07795 0.64 +1.5
1,730,014 - QEN71_RS07795 0.64 +0.4
1,730,028 + QEN71_RS07795 0.66 +0.1
1,730,029 - QEN71_RS07795 0.66 +0.3
1,730,101 + QEN71_RS07795 0.75 +0.2
1,730,101 + QEN71_RS07795 0.75 +0.1
1,730,103 + QEN71_RS07795 0.75 -0.7
1,730,103 + QEN71_RS07795 0.75 -0.0
1,730,103 + QEN71_RS07795 0.75 -1.1
1,730,104 - QEN71_RS07795 0.75 +0.5
1,730,104 - QEN71_RS07795 0.75 +1.0
1,730,104 - QEN71_RS07795 0.75 +0.8
1,730,166 + QEN71_RS07795 0.83 +0.1
1,730,166 + QEN71_RS07795 0.83 +0.8
1,730,166 + QEN71_RS07795 0.83 +0.9
1,730,166 + QEN71_RS07795 0.83 -0.7
1,730,166 + QEN71_RS07795 0.83 -0.4
1,730,167 - QEN71_RS07795 0.83 +0.1
1,730,196 + QEN71_RS07795 0.86 +0.6
1,730,196 + QEN71_RS07795 0.86 +0.8
1,730,196 + QEN71_RS07795 0.86 +1.9
1,730,196 + QEN71_RS07795 0.86 -0.9
1,730,197 - QEN71_RS07795 0.87 +0.2

Or see this region's nucleotide sequence