Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06535

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06520 and QEN71_RS06525 are separated by 131 nucleotidesQEN71_RS06525 and QEN71_RS06530 overlap by 4 nucleotidesQEN71_RS06530 and QEN71_RS06535 are separated by 94 nucleotidesQEN71_RS06535 and QEN71_RS06540 are separated by 296 nucleotides QEN71_RS06520: QEN71_RS06520 - SsrA-binding protein SmpB, at 1,449,405 to 1,449,851 _RS06520 QEN71_RS06525: QEN71_RS06525 - type II toxin-antitoxin system RatA family toxin, at 1,449,983 to 1,450,420 _RS06525 QEN71_RS06530: QEN71_RS06530 - RnfH family protein, at 1,450,417 to 1,450,749 _RS06530 QEN71_RS06535: QEN71_RS06535 - DMT family transporter, at 1,450,844 to 1,451,818 _RS06535 QEN71_RS06540: QEN71_RS06540 - IMP dehydrogenase, at 1,452,115 to 1,453,575 _RS06540 Position (kb) 1450 1451 1452Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1449.953 kb on + strandat 1449.982 kb on + strandat 1450.447 kb on + strandat 1450.792 kb on + strandat 1450.792 kb on + strandat 1450.793 kb on - strandat 1450.793 kb on - strandat 1450.793 kb on - strandat 1450.793 kb on - strandat 1450.943 kb on + strand, within QEN71_RS06535at 1450.943 kb on + strand, within QEN71_RS06535at 1450.943 kb on + strand, within QEN71_RS06535at 1450.943 kb on + strand, within QEN71_RS06535at 1450.944 kb on - strand, within QEN71_RS06535at 1450.944 kb on - strand, within QEN71_RS06535at 1450.944 kb on - strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.998 kb on + strand, within QEN71_RS06535at 1450.998 kb on + strand, within QEN71_RS06535at 1450.998 kb on + strand, within QEN71_RS06535at 1450.999 kb on - strand, within QEN71_RS06535at 1450.999 kb on - strand, within QEN71_RS06535at 1450.999 kb on - strand, within QEN71_RS06535at 1451.149 kb on + strand, within QEN71_RS06535at 1451.286 kb on + strand, within QEN71_RS06535at 1451.287 kb on - strand, within QEN71_RS06535at 1451.287 kb on - strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.777 kb on + strandat 1451.799 kb on + strandat 1451.799 kb on + strandat 1451.799 kb on + strandat 1451.799 kb on + strandat 1451.800 kb on - strandat 1451.800 kb on - strandat 1451.857 kb on + strandat 1451.857 kb on + strandat 1451.858 kb on - strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1452.043 kb on - strandat 1452.076 kb on + strandat 1452.076 kb on + strandat 1452.076 kb on + strandat 1452.076 kb on + strandat 1452.077 kb on - strandat 1452.077 kb on - strandat 1452.083 kb on + strandat 1452.084 kb on - strandat 1452.084 kb on - strandat 1452.102 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,449,953 + +0.3
1,449,982 + +0.0
1,450,447 + -1.2
1,450,792 + +0.0
1,450,792 + +0.8
1,450,793 - -0.1
1,450,793 - -1.0
1,450,793 - +0.0
1,450,793 - +0.4
1,450,943 + QEN71_RS06535 0.10 -0.8
1,450,943 + QEN71_RS06535 0.10 -0.0
1,450,943 + QEN71_RS06535 0.10 -0.3
1,450,943 + QEN71_RS06535 0.10 -0.9
1,450,944 - QEN71_RS06535 0.10 -0.7
1,450,944 - QEN71_RS06535 0.10 +0.2
1,450,944 - QEN71_RS06535 0.10 -1.5
1,450,986 + QEN71_RS06535 0.15 -1.1
1,450,986 + QEN71_RS06535 0.15 -0.4
1,450,986 + QEN71_RS06535 0.15 +1.6
1,450,986 + QEN71_RS06535 0.15 -0.1
1,450,986 + QEN71_RS06535 0.15 -0.7
1,450,986 + QEN71_RS06535 0.15 +0.4
1,450,986 + QEN71_RS06535 0.15 +0.7
1,450,986 + QEN71_RS06535 0.15 +0.3
1,450,986 + QEN71_RS06535 0.15 -1.4
1,450,987 - QEN71_RS06535 0.15 -0.5
1,450,987 - QEN71_RS06535 0.15 -0.7
1,450,987 - QEN71_RS06535 0.15 -1.3
1,450,987 - QEN71_RS06535 0.15 -1.6
1,450,987 - QEN71_RS06535 0.15 -0.8
1,450,987 - QEN71_RS06535 0.15 -0.3
1,450,998 + QEN71_RS06535 0.16 -0.7
1,450,998 + QEN71_RS06535 0.16 +0.1
1,450,998 + QEN71_RS06535 0.16 -0.4
1,450,999 - QEN71_RS06535 0.16 +0.1
1,450,999 - QEN71_RS06535 0.16 +0.1
1,450,999 - QEN71_RS06535 0.16 -2.0
1,451,149 + QEN71_RS06535 0.31 -1.6
1,451,286 + QEN71_RS06535 0.45 +0.6
1,451,287 - QEN71_RS06535 0.45 +0.1
1,451,287 - QEN71_RS06535 0.45 -0.6
1,451,580 + QEN71_RS06535 0.75 -0.5
1,451,580 + QEN71_RS06535 0.75 -0.4
1,451,580 + QEN71_RS06535 0.75 -0.8
1,451,580 + QEN71_RS06535 0.75 -0.0
1,451,580 + QEN71_RS06535 0.75 -1.3
1,451,580 + QEN71_RS06535 0.75 -0.8
1,451,580 + QEN71_RS06535 0.75 -0.4
1,451,580 + QEN71_RS06535 0.75 -0.7
1,451,580 + QEN71_RS06535 0.75 +0.0
1,451,580 + QEN71_RS06535 0.75 -0.5
1,451,580 + QEN71_RS06535 0.75 -0.6
1,451,581 - QEN71_RS06535 0.76 -2.1
1,451,581 - QEN71_RS06535 0.76 +0.6
1,451,581 - QEN71_RS06535 0.76 -3.1
1,451,581 - QEN71_RS06535 0.76 -1.8
1,451,581 - QEN71_RS06535 0.76 +1.0
1,451,581 - QEN71_RS06535 0.76 +0.4
1,451,581 - QEN71_RS06535 0.76 -0.8
1,451,581 - QEN71_RS06535 0.76 -1.5
1,451,583 + QEN71_RS06535 0.76 +1.1
1,451,583 + QEN71_RS06535 0.76 -0.1
1,451,583 + QEN71_RS06535 0.76 +1.2
1,451,583 + QEN71_RS06535 0.76 +0.3
1,451,583 + QEN71_RS06535 0.76 -1.0
1,451,583 + QEN71_RS06535 0.76 -0.7
1,451,583 + QEN71_RS06535 0.76 -0.7
1,451,583 + QEN71_RS06535 0.76 +0.8
1,451,584 - QEN71_RS06535 0.76 +0.4
1,451,584 - QEN71_RS06535 0.76 +0.7
1,451,584 - QEN71_RS06535 0.76 -0.7
1,451,584 - QEN71_RS06535 0.76 -0.0
1,451,584 - QEN71_RS06535 0.76 +0.5
1,451,584 - QEN71_RS06535 0.76 +0.1
1,451,584 - QEN71_RS06535 0.76 -1.3
1,451,697 + QEN71_RS06535 0.87 +0.7
1,451,697 + QEN71_RS06535 0.87 +0.7
1,451,697 + QEN71_RS06535 0.87 -0.3
1,451,697 + QEN71_RS06535 0.87 -0.8
1,451,697 + QEN71_RS06535 0.87 +0.1
1,451,697 + QEN71_RS06535 0.87 +1.0
1,451,698 - QEN71_RS06535 0.88 -0.2
1,451,698 - QEN71_RS06535 0.88 -0.4
1,451,698 - QEN71_RS06535 0.88 -0.0
1,451,698 - QEN71_RS06535 0.88 +0.3
1,451,698 - QEN71_RS06535 0.88 -0.4
1,451,698 - QEN71_RS06535 0.88 -0.4
1,451,698 - QEN71_RS06535 0.88 -1.9
1,451,698 - QEN71_RS06535 0.88 +0.2
1,451,698 - QEN71_RS06535 0.88 -0.8
1,451,698 - QEN71_RS06535 0.88 +1.0
1,451,698 - QEN71_RS06535 0.88 -0.8
1,451,698 - QEN71_RS06535 0.88 -0.0
1,451,706 + QEN71_RS06535 0.88 -0.8
1,451,706 + QEN71_RS06535 0.88 -0.1
1,451,706 + QEN71_RS06535 0.88 +0.6
1,451,706 + QEN71_RS06535 0.88 -1.1
1,451,707 - QEN71_RS06535 0.89 -0.6
1,451,707 - QEN71_RS06535 0.89 +0.8
1,451,707 - QEN71_RS06535 0.89 -0.6
1,451,707 - QEN71_RS06535 0.89 +0.0
1,451,707 - QEN71_RS06535 0.89 +0.7
1,451,707 - QEN71_RS06535 0.89 -0.4
1,451,777 + -1.4
1,451,799 + -0.4
1,451,799 + -0.1
1,451,799 + +0.1
1,451,799 + +0.1
1,451,800 - -0.0
1,451,800 - -0.2
1,451,857 + -1.0
1,451,857 + -0.2
1,451,858 - -1.3
1,451,914 + +2.0
1,451,914 + +1.6
1,451,914 + -0.3
1,451,914 + -1.6
1,451,914 + +0.9
1,451,915 - -1.2
1,451,915 - -1.2
1,451,915 - +1.5
1,451,915 - -2.2
1,451,915 - -0.2
1,451,915 - +1.4
1,452,043 - -0.4
1,452,076 + -0.8
1,452,076 + -0.4
1,452,076 + +0.4
1,452,076 + -0.7
1,452,077 - -0.7
1,452,077 - +0.0
1,452,083 + -0.3
1,452,084 - +0.6
1,452,084 - -1.5
1,452,102 + -2.4

Or see this region's nucleotide sequence