Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06425

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06420 and QEN71_RS06425 are separated by 189 nucleotidesQEN71_RS06425 and QEN71_RS06430 are separated by 245 nucleotides QEN71_RS06420: QEN71_RS06420 - 30S ribosomal protein S2, at 1,427,272 to 1,428,024 _RS06420 QEN71_RS06425: QEN71_RS06425 - translation elongation factor Ts, at 1,428,214 to 1,429,095 _RS06425 QEN71_RS06430: QEN71_RS06430 - UMP kinase, at 1,429,341 to 1,430,054 _RS06430 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -3 -2 -1 0 1at 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.060 kb on + strandat 1428.075 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strandat 1429.093 kb on + strandat 1429.093 kb on + strandat 1429.093 kb on + strandat 1429.093 kb on + strandat 1429.093 kb on + strandat 1429.093 kb on + strandat 1429.094 kb on - strandat 1429.094 kb on - strandat 1429.094 kb on - strandat 1429.094 kb on - strandat 1429.104 kb on + strandat 1429.104 kb on + strandat 1429.104 kb on + strandat 1429.267 kb on + strandat 1429.278 kb on + strandat 1429.278 kb on + strandat 1429.278 kb on + strandat 1429.284 kb on + strandat 1429.284 kb on + strandat 1430.052 kb on + strandat 1430.052 kb on + strandat 1430.062 kb on + strandat 1430.062 kb on + strandat 1430.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,428,022 + +0.0
1,428,022 + -2.0
1,428,022 + -0.1
1,428,022 + -0.6
1,428,022 + -0.6
1,428,058 + -0.4
1,428,058 + -3.3
1,428,058 + +0.7
1,428,058 + -1.1
1,428,058 + -0.5
1,428,058 + -1.7
1,428,058 + -0.5
1,428,060 + -0.3
1,428,075 + +0.2
1,428,130 + -0.8
1,428,130 + -0.6
1,428,130 + -0.4
1,428,130 + +0.7
1,428,130 + +0.2
1,429,093 + +0.8
1,429,093 + +0.5
1,429,093 + +0.1
1,429,093 + -0.0
1,429,093 + -1.1
1,429,093 + -0.9
1,429,094 - -0.2
1,429,094 - -0.6
1,429,094 - -0.8
1,429,094 - -0.0
1,429,104 + +0.3
1,429,104 + +0.6
1,429,104 + -1.9
1,429,267 + -0.4
1,429,278 + -0.5
1,429,278 + +0.7
1,429,278 + -0.0
1,429,284 + -0.0
1,429,284 + +1.0
1,430,052 + +0.3
1,430,052 + +0.4
1,430,062 + -0.4
1,430,062 + -1.9
1,430,062 + +1.0

Or see this region's nucleotide sequence