Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06415

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06410 and QEN71_RS06415 are separated by 25 nucleotidesQEN71_RS06415 and QEN71_RS06420 are separated by 398 nucleotides QEN71_RS06410: QEN71_RS06410 - [protein-PII] uridylyltransferase, at 1,423,456 to 1,426,035 _RS06410 QEN71_RS06415: QEN71_RS06415 - type I methionyl aminopeptidase, at 1,426,061 to 1,426,873 _RS06415 QEN71_RS06420: QEN71_RS06420 - 30S ribosomal protein S2, at 1,427,272 to 1,428,024 _RS06420 Position (kb) 1426 1427Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1425.087 kb on + strand, within QEN71_RS06410at 1425.087 kb on + strand, within QEN71_RS06410at 1425.088 kb on - strand, within QEN71_RS06410at 1425.088 kb on - strand, within QEN71_RS06410at 1425.088 kb on - strand, within QEN71_RS06410at 1425.088 kb on - strand, within QEN71_RS06410at 1425.158 kb on + strand, within QEN71_RS06410at 1425.158 kb on + strand, within QEN71_RS06410at 1425.159 kb on - strand, within QEN71_RS06410at 1425.473 kb on + strand, within QEN71_RS06410at 1425.603 kb on + strand, within QEN71_RS06410at 1425.679 kb on + strand, within QEN71_RS06410at 1425.680 kb on - strand, within QEN71_RS06410at 1425.680 kb on - strand, within QEN71_RS06410at 1425.924 kb on + strandat 1425.924 kb on + strandat 1425.925 kb on - strandat 1425.980 kb on + strandat 1425.980 kb on + strandat 1425.980 kb on + strandat 1425.980 kb on + strandat 1425.980 kb on + strandat 1425.980 kb on + strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1426.029 kb on + strandat 1426.029 kb on + strandat 1426.030 kb on - strandat 1426.030 kb on - strandat 1426.030 kb on - strandat 1426.035 kb on + strandat 1426.035 kb on + strandat 1426.035 kb on + strandat 1426.035 kb on + strandat 1426.036 kb on - strandat 1426.036 kb on - strandat 1426.036 kb on - strandat 1426.056 kb on + strandat 1426.056 kb on + strandat 1426.056 kb on + strandat 1426.056 kb on + strandat 1426.057 kb on - strandat 1426.057 kb on - strandat 1426.057 kb on - strandat 1426.057 kb on - strandat 1426.057 kb on - strandat 1426.128 kb on + strandat 1426.128 kb on + strandat 1426.129 kb on - strandat 1426.129 kb on - strandat 1426.129 kb on - strandat 1426.305 kb on + strand, within QEN71_RS06415at 1426.305 kb on + strand, within QEN71_RS06415at 1426.305 kb on + strand, within QEN71_RS06415at 1426.305 kb on + strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.359 kb on + strand, within QEN71_RS06415at 1426.359 kb on + strand, within QEN71_RS06415at 1426.359 kb on + strand, within QEN71_RS06415at 1426.360 kb on - strand, within QEN71_RS06415at 1426.378 kb on - strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.545 kb on + strand, within QEN71_RS06415at 1426.545 kb on + strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.618 kb on + strand, within QEN71_RS06415at 1426.618 kb on + strand, within QEN71_RS06415at 1426.619 kb on - strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.690 kb on - strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.867 kb on + strandat 1426.867 kb on + strandat 1426.867 kb on + strandat 1426.867 kb on + strandat 1426.868 kb on - strandat 1426.897 kb on - strandat 1426.897 kb on - strandat 1426.897 kb on - strandat 1426.917 kb on + strandat 1426.917 kb on + strandat 1426.917 kb on + strandat 1426.917 kb on + strandat 1426.918 kb on - strandat 1426.918 kb on - strandat 1427.077 kb on + strandat 1427.077 kb on + strandat 1427.078 kb on - strandat 1427.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,425,087 + QEN71_RS06410 0.63 +0.9
1,425,087 + QEN71_RS06410 0.63 -0.8
1,425,088 - QEN71_RS06410 0.63 +1.0
1,425,088 - QEN71_RS06410 0.63 +2.2
1,425,088 - QEN71_RS06410 0.63 +0.4
1,425,088 - QEN71_RS06410 0.63 +1.2
1,425,158 + QEN71_RS06410 0.66 +2.0
1,425,158 + QEN71_RS06410 0.66 +2.3
1,425,159 - QEN71_RS06410 0.66 +1.5
1,425,473 + QEN71_RS06410 0.78 +1.5
1,425,603 + QEN71_RS06410 0.83 +1.0
1,425,679 + QEN71_RS06410 0.86 +0.4
1,425,680 - QEN71_RS06410 0.86 +1.4
1,425,680 - QEN71_RS06410 0.86 +0.7
1,425,924 + +0.1
1,425,924 + +2.2
1,425,925 - +1.7
1,425,980 + +1.2
1,425,980 + -0.4
1,425,980 + -0.4
1,425,980 + -0.4
1,425,980 + -0.4
1,425,980 + -0.0
1,425,981 - -1.0
1,425,981 - +0.6
1,425,981 - +0.5
1,425,981 - +1.4
1,425,981 - +1.0
1,425,981 - +1.3
1,425,981 - +0.9
1,425,981 - +0.4
1,425,981 - +0.8
1,425,981 - +1.6
1,426,029 + +0.9
1,426,029 + -0.5
1,426,030 - +0.4
1,426,030 - +0.0
1,426,030 - +0.7
1,426,035 + +0.5
1,426,035 + +0.6
1,426,035 + +0.1
1,426,035 + +1.6
1,426,036 - +0.1
1,426,036 - +0.5
1,426,036 - -1.3
1,426,056 + +1.1
1,426,056 + -0.6
1,426,056 + -0.2
1,426,056 + +0.8
1,426,057 - +0.2
1,426,057 - -1.2
1,426,057 - +0.3
1,426,057 - -0.5
1,426,057 - -0.5
1,426,128 + +0.2
1,426,128 + -0.4
1,426,129 - -0.3
1,426,129 - -0.2
1,426,129 - -0.7
1,426,305 + QEN71_RS06415 0.30 +0.2
1,426,305 + QEN71_RS06415 0.30 -1.0
1,426,305 + QEN71_RS06415 0.30 +1.1
1,426,305 + QEN71_RS06415 0.30 -2.0
1,426,306 - QEN71_RS06415 0.30 -0.0
1,426,306 - QEN71_RS06415 0.30 +1.2
1,426,306 - QEN71_RS06415 0.30 +2.3
1,426,306 - QEN71_RS06415 0.30 +1.0
1,426,306 - QEN71_RS06415 0.30 -0.0
1,426,306 - QEN71_RS06415 0.30 -0.0
1,426,359 + QEN71_RS06415 0.37 +1.3
1,426,359 + QEN71_RS06415 0.37 +2.1
1,426,359 + QEN71_RS06415 0.37 -0.0
1,426,360 - QEN71_RS06415 0.37 -0.7
1,426,378 - QEN71_RS06415 0.39 +0.2
1,426,473 + QEN71_RS06415 0.51 +0.3
1,426,473 + QEN71_RS06415 0.51 +0.4
1,426,473 + QEN71_RS06415 0.51 -0.4
1,426,473 + QEN71_RS06415 0.51 +2.0
1,426,473 + QEN71_RS06415 0.51 +2.4
1,426,473 + QEN71_RS06415 0.51 -0.4
1,426,473 + QEN71_RS06415 0.51 +0.2
1,426,473 + QEN71_RS06415 0.51 -2.6
1,426,473 + QEN71_RS06415 0.51 -1.2
1,426,473 + QEN71_RS06415 0.51 +0.8
1,426,473 + QEN71_RS06415 0.51 +0.8
1,426,473 + QEN71_RS06415 0.51 +1.1
1,426,473 + QEN71_RS06415 0.51 +1.5
1,426,473 + QEN71_RS06415 0.51 +0.4
1,426,473 + QEN71_RS06415 0.51 +0.2
1,426,473 + QEN71_RS06415 0.51 -0.1
1,426,473 + QEN71_RS06415 0.51 +1.0
1,426,474 - QEN71_RS06415 0.51 -0.0
1,426,474 - QEN71_RS06415 0.51 +0.6
1,426,474 - QEN71_RS06415 0.51 -1.2
1,426,474 - QEN71_RS06415 0.51 +0.6
1,426,474 - QEN71_RS06415 0.51 -2.2
1,426,474 - QEN71_RS06415 0.51 +0.5
1,426,474 - QEN71_RS06415 0.51 +0.5
1,426,474 - QEN71_RS06415 0.51 -0.1
1,426,474 - QEN71_RS06415 0.51 -0.3
1,426,474 - QEN71_RS06415 0.51 -0.6
1,426,474 - QEN71_RS06415 0.51 +1.0
1,426,474 - QEN71_RS06415 0.51 +1.8
1,426,474 - QEN71_RS06415 0.51 +1.0
1,426,474 - QEN71_RS06415 0.51 +1.3
1,426,474 - QEN71_RS06415 0.51 +1.0
1,426,474 - QEN71_RS06415 0.51 +2.0
1,426,474 - QEN71_RS06415 0.51 +0.3
1,426,474 - QEN71_RS06415 0.51 -2.6
1,426,474 - QEN71_RS06415 0.51 -1.9
1,426,474 - QEN71_RS06415 0.51 +0.1
1,426,474 - QEN71_RS06415 0.51 +0.6
1,426,474 - QEN71_RS06415 0.51 +0.3
1,426,474 - QEN71_RS06415 0.51 +1.0
1,426,474 - QEN71_RS06415 0.51 +0.5
1,426,545 + QEN71_RS06415 0.60 -0.2
1,426,545 + QEN71_RS06415 0.60 -1.0
1,426,546 - QEN71_RS06415 0.60 -0.0
1,426,546 - QEN71_RS06415 0.60 +2.0
1,426,546 - QEN71_RS06415 0.60 +0.6
1,426,546 - QEN71_RS06415 0.60 -1.9
1,426,548 + QEN71_RS06415 0.60 +0.8
1,426,548 + QEN71_RS06415 0.60 +2.0
1,426,548 + QEN71_RS06415 0.60 +3.0
1,426,548 + QEN71_RS06415 0.60 +0.1
1,426,548 + QEN71_RS06415 0.60 -0.7
1,426,549 - QEN71_RS06415 0.60 +1.1
1,426,549 - QEN71_RS06415 0.60 +0.9
1,426,549 - QEN71_RS06415 0.60 +1.2
1,426,549 - QEN71_RS06415 0.60 -2.7
1,426,549 - QEN71_RS06415 0.60 -0.6
1,426,618 + QEN71_RS06415 0.69 +0.5
1,426,618 + QEN71_RS06415 0.69 +1.5
1,426,619 - QEN71_RS06415 0.69 -0.7
1,426,689 + QEN71_RS06415 0.77 -0.4
1,426,689 + QEN71_RS06415 0.77 +2.0
1,426,689 + QEN71_RS06415 0.77 +2.0
1,426,689 + QEN71_RS06415 0.77 -0.2
1,426,689 + QEN71_RS06415 0.77 +1.6
1,426,690 - QEN71_RS06415 0.77 +0.8
1,426,718 + QEN71_RS06415 0.81 +0.6
1,426,718 + QEN71_RS06415 0.81 -0.5
1,426,718 + QEN71_RS06415 0.81 +0.8
1,426,718 + QEN71_RS06415 0.81 -0.9
1,426,719 - QEN71_RS06415 0.81 -0.4
1,426,719 - QEN71_RS06415 0.81 +1.5
1,426,719 - QEN71_RS06415 0.81 +0.4
1,426,719 - QEN71_RS06415 0.81 +1.6
1,426,719 - QEN71_RS06415 0.81 -0.7
1,426,719 - QEN71_RS06415 0.81 +0.2
1,426,719 - QEN71_RS06415 0.81 +0.5
1,426,719 - QEN71_RS06415 0.81 -1.7
1,426,719 - QEN71_RS06415 0.81 -0.0
1,426,731 + QEN71_RS06415 0.82 +1.2
1,426,731 + QEN71_RS06415 0.82 +0.6
1,426,731 + QEN71_RS06415 0.82 -0.6
1,426,731 + QEN71_RS06415 0.82 +1.0
1,426,731 + QEN71_RS06415 0.82 -0.0
1,426,731 + QEN71_RS06415 0.82 +0.5
1,426,731 + QEN71_RS06415 0.82 +0.0
1,426,731 + QEN71_RS06415 0.82 +0.4
1,426,731 + QEN71_RS06415 0.82 -0.0
1,426,731 + QEN71_RS06415 0.82 -2.6
1,426,731 + QEN71_RS06415 0.82 -0.6
1,426,731 + QEN71_RS06415 0.82 -0.0
1,426,732 - QEN71_RS06415 0.83 +1.5
1,426,732 - QEN71_RS06415 0.83 +0.4
1,426,732 - QEN71_RS06415 0.83 +1.3
1,426,732 - QEN71_RS06415 0.83 +1.0
1,426,732 - QEN71_RS06415 0.83 +0.5
1,426,732 - QEN71_RS06415 0.83 -0.6
1,426,732 - QEN71_RS06415 0.83 +0.4
1,426,732 - QEN71_RS06415 0.83 -1.0
1,426,732 - QEN71_RS06415 0.83 +0.0
1,426,732 - QEN71_RS06415 0.83 -0.1
1,426,732 - QEN71_RS06415 0.83 -1.0
1,426,732 - QEN71_RS06415 0.83 +1.0
1,426,732 - QEN71_RS06415 0.83 +0.1
1,426,794 + -0.7
1,426,794 + -0.2
1,426,794 + -0.6
1,426,794 + +0.5
1,426,794 + +1.1
1,426,794 + +0.1
1,426,794 + +0.7
1,426,795 - +0.4
1,426,795 - -0.0
1,426,795 - +0.9
1,426,795 - -1.2
1,426,795 - +0.3
1,426,864 + +0.0
1,426,864 + +1.2
1,426,864 + +1.4
1,426,864 + +2.3
1,426,864 + +0.7
1,426,864 + +2.6
1,426,865 - +0.4
1,426,865 - +0.4
1,426,865 - +0.6
1,426,865 - +0.0
1,426,865 - +0.4
1,426,865 - +1.3
1,426,867 + +1.6
1,426,867 + +1.4
1,426,867 + +0.3
1,426,867 + +2.0
1,426,868 - +1.2
1,426,897 - -1.1
1,426,897 - -1.6
1,426,897 - -0.8
1,426,917 + +0.0
1,426,917 + +0.3
1,426,917 + -0.1
1,426,917 + -0.8
1,426,918 - +0.8
1,426,918 - -2.1
1,427,077 + +0.7
1,427,077 + -1.7
1,427,078 - +0.4
1,427,078 - -0.7

Or see this region's nucleotide sequence