Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05975

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05970 and QEN71_RS05975 are separated by 123 nucleotidesQEN71_RS05975 and QEN71_RS05980 are separated by 33 nucleotides QEN71_RS05970: QEN71_RS05970 - helix-turn-helix domain-containing protein, at 1,322,709 to 1,323,812 _RS05970 QEN71_RS05975: QEN71_RS05975 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,323,936 to 1,325,249 _RS05975 QEN71_RS05980: QEN71_RS05980 - histidine--tRNA ligase, at 1,325,283 to 1,326,623 _RS05980 Position (kb) 1323 1324 1325 1326Strain fitness (log2 ratio) -2 -1 0 1 2at 1322.979 kb on + strand, within QEN71_RS05970at 1322.979 kb on + strand, within QEN71_RS05970at 1322.979 kb on + strand, within QEN71_RS05970at 1323.119 kb on + strand, within QEN71_RS05970at 1323.734 kb on + strandat 1323.734 kb on + strandat 1323.768 kb on + strandat 1323.768 kb on + strandat 1323.768 kb on + strandat 1323.768 kb on + strandat 1323.931 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strandat 1325.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,322,979 + QEN71_RS05970 0.24 +1.6
1,322,979 + QEN71_RS05970 0.24 -1.0
1,322,979 + QEN71_RS05970 0.24 -1.1
1,323,119 + QEN71_RS05970 0.37 -0.2
1,323,734 + +0.8
1,323,734 + +0.3
1,323,768 + +1.7
1,323,768 + -0.2
1,323,768 + +2.0
1,323,768 + -0.7
1,323,931 + +0.7
1,325,211 + +0.7
1,325,211 + -2.3
1,325,211 + +2.3
1,325,211 + -0.6
1,325,211 + -1.3
1,325,211 + +0.4
1,325,211 + +2.0
1,325,211 + +0.4
1,325,211 + -0.7

Or see this region's nucleotide sequence