Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04203

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04202 and MIT1002_04203 are separated by 169 nucleotidesMIT1002_04203 and MIT1002_04204 are separated by 2 nucleotides MIT1002_04202: MIT1002_04202 - Transposase, TnpA family, at 65,172 to 68,105 _04202 MIT1002_04203: MIT1002_04203 - hypothetical protein, at 68,275 to 69,204 _04203 MIT1002_04204: MIT1002_04204 - putative chromate transport protein, at 69,207 to 70,664 _04204 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 67.289 kb on + strand, within MIT1002_04202at 67.307 kb on + strand, within MIT1002_04202at 67.307 kb on + strand, within MIT1002_04202at 67.315 kb on - strand, within MIT1002_04202at 67.390 kb on - strand, within MIT1002_04202at 67.423 kb on - strand, within MIT1002_04202at 67.472 kb on + strand, within MIT1002_04202at 67.472 kb on + strand, within MIT1002_04202at 67.576 kb on + strand, within MIT1002_04202at 67.607 kb on - strand, within MIT1002_04202at 67.609 kb on + strand, within MIT1002_04202at 67.711 kb on - strand, within MIT1002_04202at 67.720 kb on - strand, within MIT1002_04202at 67.725 kb on + strand, within MIT1002_04202at 67.733 kb on - strand, within MIT1002_04202at 67.793 kb on + strand, within MIT1002_04202at 67.793 kb on - strand, within MIT1002_04202at 67.802 kb on - strand, within MIT1002_04202at 67.802 kb on - strand, within MIT1002_04202at 67.823 kb on + strandat 67.831 kb on - strandat 67.866 kb on - strandat 67.869 kb on + strandat 67.877 kb on - strandat 68.067 kb on - strandat 68.080 kb on + strandat 68.080 kb on + strandat 68.103 kb on + strandat 68.171 kb on + strandat 68.179 kb on + strandat 68.179 kb on - strandat 68.321 kb on - strandat 68.336 kb on - strandat 68.410 kb on - strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.473 kb on - strand, within MIT1002_04203at 68.473 kb on - strand, within MIT1002_04203at 68.520 kb on - strand, within MIT1002_04203at 68.599 kb on + strand, within MIT1002_04203at 68.612 kb on + strand, within MIT1002_04203at 68.692 kb on + strand, within MIT1002_04203at 68.711 kb on - strand, within MIT1002_04203at 68.748 kb on + strand, within MIT1002_04203at 68.748 kb on + strand, within MIT1002_04203at 68.799 kb on + strand, within MIT1002_04203at 68.804 kb on + strand, within MIT1002_04203at 68.828 kb on - strand, within MIT1002_04203at 68.852 kb on - strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.017 kb on - strand, within MIT1002_04203at 69.040 kb on + strand, within MIT1002_04203at 69.048 kb on - strand, within MIT1002_04203at 69.048 kb on - strand, within MIT1002_04203at 69.050 kb on + strand, within MIT1002_04203at 69.050 kb on + strand, within MIT1002_04203at 69.199 kb on + strandat 69.292 kb on - strandat 69.292 kb on - strandat 69.303 kb on + strandat 69.310 kb on + strandat 69.310 kb on + strandat 69.310 kb on + strandat 69.310 kb on - strandat 69.318 kb on - strandat 69.386 kb on + strand, within MIT1002_04204at 69.390 kb on - strand, within MIT1002_04204at 69.394 kb on + strand, within MIT1002_04204at 69.419 kb on + strand, within MIT1002_04204at 69.428 kb on + strand, within MIT1002_04204at 69.449 kb on + strand, within MIT1002_04204at 69.457 kb on - strand, within MIT1002_04204at 69.467 kb on + strand, within MIT1002_04204at 69.470 kb on - strand, within MIT1002_04204at 69.475 kb on - strand, within MIT1002_04204at 69.496 kb on + strand, within MIT1002_04204at 69.522 kb on + strand, within MIT1002_04204at 69.536 kb on + strand, within MIT1002_04204at 69.536 kb on + strand, within MIT1002_04204at 69.559 kb on - strand, within MIT1002_04204at 69.693 kb on + strand, within MIT1002_04204at 69.705 kb on + strand, within MIT1002_04204at 69.838 kb on + strand, within MIT1002_04204at 69.846 kb on - strand, within MIT1002_04204at 69.895 kb on + strand, within MIT1002_04204at 69.946 kb on + strand, within MIT1002_04204at 69.954 kb on - strand, within MIT1002_04204at 69.969 kb on - strand, within MIT1002_04204at 69.987 kb on - strand, within MIT1002_04204at 70.001 kb on + strand, within MIT1002_04204at 70.001 kb on + strand, within MIT1002_04204at 70.026 kb on - strand, within MIT1002_04204at 70.068 kb on + strand, within MIT1002_04204at 70.073 kb on - strand, within MIT1002_04204at 70.092 kb on + strand, within MIT1002_04204at 70.097 kb on + strand, within MIT1002_04204at 70.105 kb on - strand, within MIT1002_04204at 70.115 kb on - strand, within MIT1002_04204at 70.143 kb on - strand, within MIT1002_04204at 70.152 kb on + strand, within MIT1002_04204at 70.161 kb on + strand, within MIT1002_04204at 70.166 kb on + strand, within MIT1002_04204at 70.166 kb on + strand, within MIT1002_04204at 70.169 kb on - strand, within MIT1002_04204at 70.179 kb on + strand, within MIT1002_04204at 70.196 kb on + strand, within MIT1002_04204at 70.204 kb on - strand, within MIT1002_04204

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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67,289 + MIT1002_04202 0.72 -1.0
67,307 + MIT1002_04202 0.73 +0.1
67,307 + MIT1002_04202 0.73 +0.9
67,315 - MIT1002_04202 0.73 -0.6
67,390 - MIT1002_04202 0.76 -0.4
67,423 - MIT1002_04202 0.77 +0.5
67,472 + MIT1002_04202 0.78 -0.2
67,472 + MIT1002_04202 0.78 +0.8
67,576 + MIT1002_04202 0.82 +0.1
67,607 - MIT1002_04202 0.83 -0.1
67,609 + MIT1002_04202 0.83 +0.0
67,711 - MIT1002_04202 0.87 -1.1
67,720 - MIT1002_04202 0.87 +0.3
67,725 + MIT1002_04202 0.87 -0.4
67,733 - MIT1002_04202 0.87 +0.9
67,793 + MIT1002_04202 0.89 +0.3
67,793 - MIT1002_04202 0.89 +0.5
67,802 - MIT1002_04202 0.90 +0.5
67,802 - MIT1002_04202 0.90 -1.4
67,823 + +1.0
67,831 - +0.2
67,866 - -0.4
67,869 + +0.7
67,877 - -0.3
68,067 - +0.1
68,080 + -0.0
68,080 + +0.7
68,103 + +0.4
68,171 + +0.5
68,179 + -0.3
68,179 - +0.2
68,321 - +0.1
68,336 - +0.6
68,410 - MIT1002_04203 0.15 +0.2
68,465 + MIT1002_04203 0.20 -0.0
68,465 + MIT1002_04203 0.20 -0.3
68,465 + MIT1002_04203 0.20 -2.9
68,473 - MIT1002_04203 0.21 -0.3
68,473 - MIT1002_04203 0.21 -0.6
68,520 - MIT1002_04203 0.26 +0.0
68,599 + MIT1002_04203 0.35 +0.3
68,612 + MIT1002_04203 0.36 +0.1
68,692 + MIT1002_04203 0.45 -1.4
68,711 - MIT1002_04203 0.47 -2.5
68,748 + MIT1002_04203 0.51 -0.5
68,748 + MIT1002_04203 0.51 -3.2
68,799 + MIT1002_04203 0.56 +0.9
68,804 + MIT1002_04203 0.57 +0.2
68,828 - MIT1002_04203 0.59 -1.3
68,852 - MIT1002_04203 0.62 +1.6
69,009 + MIT1002_04203 0.79 +0.4
69,009 + MIT1002_04203 0.79 -0.1
69,009 + MIT1002_04203 0.79 -1.8
69,017 - MIT1002_04203 0.80 +0.2
69,040 + MIT1002_04203 0.82 -1.8
69,048 - MIT1002_04203 0.83 -2.3
69,048 - MIT1002_04203 0.83 -0.7
69,050 + MIT1002_04203 0.83 +0.5
69,050 + MIT1002_04203 0.83 +0.8
69,199 + +1.8
69,292 - +0.6
69,292 - +0.8
69,303 + +0.3
69,310 + -0.6
69,310 + -0.0
69,310 + -0.2
69,310 - +1.3
69,318 - +0.6
69,386 + MIT1002_04204 0.12 +1.2
69,390 - MIT1002_04204 0.13 -0.3
69,394 + MIT1002_04204 0.13 -1.1
69,419 + MIT1002_04204 0.15 +0.2
69,428 + MIT1002_04204 0.15 -0.1
69,449 + MIT1002_04204 0.17 -0.9
69,457 - MIT1002_04204 0.17 -0.2
69,467 + MIT1002_04204 0.18 -0.9
69,470 - MIT1002_04204 0.18 +1.1
69,475 - MIT1002_04204 0.18 -0.0
69,496 + MIT1002_04204 0.20 -0.5
69,522 + MIT1002_04204 0.22 +1.1
69,536 + MIT1002_04204 0.23 +1.0
69,536 + MIT1002_04204 0.23 +0.3
69,559 - MIT1002_04204 0.24 +0.3
69,693 + MIT1002_04204 0.33 +0.3
69,705 + MIT1002_04204 0.34 -0.9
69,838 + MIT1002_04204 0.43 -0.2
69,846 - MIT1002_04204 0.44 -0.4
69,895 + MIT1002_04204 0.47 -0.0
69,946 + MIT1002_04204 0.51 -2.0
69,954 - MIT1002_04204 0.51 +0.3
69,969 - MIT1002_04204 0.52 +0.1
69,987 - MIT1002_04204 0.53 +0.1
70,001 + MIT1002_04204 0.54 -0.0
70,001 + MIT1002_04204 0.54 -0.3
70,026 - MIT1002_04204 0.56 -0.1
70,068 + MIT1002_04204 0.59 -0.8
70,073 - MIT1002_04204 0.59 -0.1
70,092 + MIT1002_04204 0.61 -0.2
70,097 + MIT1002_04204 0.61 -1.2
70,105 - MIT1002_04204 0.62 +0.7
70,115 - MIT1002_04204 0.62 -0.4
70,143 - MIT1002_04204 0.64 +0.1
70,152 + MIT1002_04204 0.65 -0.9
70,161 + MIT1002_04204 0.65 +0.5
70,166 + MIT1002_04204 0.66 -0.1
70,166 + MIT1002_04204 0.66 -0.9
70,169 - MIT1002_04204 0.66 +0.4
70,179 + MIT1002_04204 0.67 -0.2
70,196 + MIT1002_04204 0.68 +1.1
70,204 - MIT1002_04204 0.68 +0.1

Or see this region's nucleotide sequence