Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03451

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
3,858,218	+				-0.2
3,858,335	-				+0.7
3,858,369	+				+0.3
3,858,459	+		MIT1002_03450	0.19	-0.0
3,858,479	-		MIT1002_03450	0.22	+0.1
3,858,662	-		MIT1002_03450	0.51	-0.1
3,858,777	+		MIT1002_03450	0.69	-0.5
3,858,919	+				+0.5
3,858,950	+				+0.5
3,858,958	-				-0.1
3,858,958	-				-0.0
3,858,958	-				+1.4
3,858,958	-				+3.2
3,859,040	+				-0.5
3,859,052	+				+0.6
3,859,061	+				+0.3
3,859,128	+				+0.9
3,859,198	-		MIT1002_03451	0.19	+0.2
3,859,209	+		MIT1002_03451	0.21	-0.1
3,859,445	-		MIT1002_03451	0.67	-0.4
3,859,609	+				+0.3
3,859,616	+				-1.5
3,859,621	+				+1.0
3,859,623	+				+0.2
3,859,629	-				-0.3
3,859,629	-				-0.5
3,859,629	-				-0.3
3,859,696	-				+0.3
3,859,698	-				-0.6
3,859,797	+				-0.4
3,859,880	+				-0.6
3,859,896	-		MIT1002_03452	0.11	+1.4
3,859,963	+		MIT1002_03452	0.17	-0.2
3,859,963	+		MIT1002_03452	0.17	-0.3
3,859,966	-		MIT1002_03452	0.17	+0.1
3,859,973	+		MIT1002_03452	0.18	-0.3
3,860,055	+		MIT1002_03452	0.26	-2.0
3,860,060	+		MIT1002_03452	0.26	+0.8
3,860,092	+		MIT1002_03452	0.29	+1.2
3,860,092	+		MIT1002_03452	0.29	-0.1
3,860,100	-		MIT1002_03452	0.30	-0.1
3,860,100	-		MIT1002_03452	0.30	+1.8
3,860,102	+		MIT1002_03452	0.30	+1.5
3,860,110	-		MIT1002_03452	0.31	-0.5
3,860,245	-		MIT1002_03452	0.44	-1.7
3,860,267	+		MIT1002_03452	0.46	+0.8
3,860,267	+		MIT1002_03452	0.46	-0.1
3,860,344	+		MIT1002_03452	0.53	-0.0
3,860,344	+		MIT1002_03452	0.53	-2.2
3,860,352	-		MIT1002_03452	0.54	-0.2
3,860,458	+		MIT1002_03452	0.64	+0.8
3,860,458	+		MIT1002_03452	0.64	+0.1
3,860,458	+		MIT1002_03452	0.64	-0.6
3,860,466	-		MIT1002_03452	0.65	+0.1
3,860,476	-		MIT1002_03452	0.66	-0.0
3,860,502	+		MIT1002_03452	0.68	+0.1
3,860,528	+		MIT1002_03452	0.71	+0.1
3,860,529	-		MIT1002_03452	0.71	-0.4
3,860,536	-		MIT1002_03452	0.71	-2.4
3,860,550	+		MIT1002_03452	0.73	+0.3
3,860,550	+		MIT1002_03452	0.73	-0.5
3,860,558	-		MIT1002_03452	0.73	-1.3
3,860,591	-		MIT1002_03452	0.76	-0.0
3,860,605	-		MIT1002_03452	0.78	+0.3