Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03438

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
3,841,913	-		MIT1002_03437	0.12	+0.1
3,841,922	-		MIT1002_03437	0.13	+2.0
3,841,941	-		MIT1002_03437	0.14	+0.1
3,841,941	-		MIT1002_03437	0.14	+1.2
3,841,985	-		MIT1002_03437	0.18	-0.9
3,842,019	-		MIT1002_03437	0.21	+0.0
3,842,062	+		MIT1002_03437	0.25	-1.6
3,842,070	-		MIT1002_03437	0.26	+0.6
3,842,107	-		MIT1002_03437	0.29	+0.3
3,842,261	+		MIT1002_03437	0.43	+1.3
3,842,269	-		MIT1002_03437	0.44	-0.4
3,842,271	+		MIT1002_03437	0.44	+0.5
3,842,281	+		MIT1002_03437	0.45	+1.8
3,842,290	+		MIT1002_03437	0.46	+1.8
3,842,341	-		MIT1002_03437	0.50	+4.6
3,842,396	+		MIT1002_03437	0.55	-1.8
3,842,396	+		MIT1002_03437	0.55	+0.1
3,842,397	-		MIT1002_03437	0.56	+0.8
3,842,404	-		MIT1002_03437	0.56	-0.6
3,842,472	-		MIT1002_03437	0.62	-0.0
3,842,531	-		MIT1002_03437	0.68	-0.0
3,842,651	+		MIT1002_03437	0.79	-0.8
3,842,659	-		MIT1002_03437	0.79	-0.1
3,842,708	-		MIT1002_03437	0.84	-0.7
3,842,772	+		MIT1002_03437	0.89	-0.7
3,842,780	+				+1.9
3,842,879	+				-0.4
3,842,899	-				+1.1
3,842,967	-				-0.1
3,842,968	+				-0.2
3,843,084	-				+0.7
3,843,084	-				+0.3
3,843,219	+		MIT1002_03438	0.15	-1.0
3,843,219	+		MIT1002_03438	0.15	+1.3
3,843,219	+		MIT1002_03438	0.15	+0.3
3,843,226	+		MIT1002_03438	0.15	-0.2
3,843,271	+		MIT1002_03438	0.17	-3.9
3,843,281	-		MIT1002_03438	0.18	+1.6
3,843,363	-		MIT1002_03438	0.21	+1.2
3,843,375	+		MIT1002_03438	0.22	+0.5
3,843,419	+		MIT1002_03438	0.24	+1.0
3,843,431	+		MIT1002_03438	0.24	+2.2
3,843,439	-		MIT1002_03438	0.24	+0.5
3,843,439	-		MIT1002_03438	0.24	+0.7
3,843,464	-		MIT1002_03438	0.26	+0.7
3,843,518	-		MIT1002_03438	0.28	+1.7
3,843,541	-		MIT1002_03438	0.29	+1.7
3,843,541	-		MIT1002_03438	0.29	-0.1
3,843,576	-		MIT1002_03438	0.30	+1.8
3,843,591	+		MIT1002_03438	0.31	+1.1
3,843,591	+		MIT1002_03438	0.31	-0.5
3,843,608	+		MIT1002_03438	0.32	+0.7
3,843,636	+		MIT1002_03438	0.33	-0.1
3,843,734	+		MIT1002_03438	0.37	-0.3
3,843,831	+		MIT1002_03438	0.42	-1.5
3,843,839	-		MIT1002_03438	0.42	+1.8
3,843,877	-		MIT1002_03438	0.44	+0.9
3,843,913	+		MIT1002_03438	0.45	+2.3
3,843,946	-		MIT1002_03438	0.47	+0.7
3,844,016	+		MIT1002_03438	0.50	+1.0
3,844,026	+		MIT1002_03438	0.50	+0.0
3,844,034	-		MIT1002_03438	0.51	-0.4
3,844,038	+		MIT1002_03438	0.51	+1.6
3,844,056	-		MIT1002_03438	0.52	+1.2
3,844,065	+		MIT1002_03438	0.52	+0.2
3,844,065	+		MIT1002_03438	0.52	+0.3
3,844,155	+		MIT1002_03438	0.56	+1.2
3,844,192	-		MIT1002_03438	0.58	-2.5
3,844,194	+		MIT1002_03438	0.58	+0.2
3,844,236	-		MIT1002_03438	0.59	-0.1
3,844,281	+		MIT1002_03438	0.61	-0.5
3,844,352	+		MIT1002_03438	0.65	-0.7
3,844,362	+		MIT1002_03438	0.65	+0.1
3,844,370	-		MIT1002_03438	0.65	+0.7
3,844,391	-		MIT1002_03438	0.66	-0.7
3,844,495	+		MIT1002_03438	0.71	+0.7
3,844,608	+		MIT1002_03438	0.76	+0.5
3,844,608	+		MIT1002_03438	0.76	+0.4
3,844,616	-		MIT1002_03438	0.76	-0.3
3,844,616	-		MIT1002_03438	0.76	-0.4
3,844,616	-		MIT1002_03438	0.76	-1.1
3,844,616	-		MIT1002_03438	0.76	+0.7
3,844,616	-		MIT1002_03438	0.76	-0.6
3,844,616	-		MIT1002_03438	0.76	+0.3
3,844,767	-		MIT1002_03438	0.83	+0.9
3,844,776	+		MIT1002_03438	0.83	-0.3
3,844,776	+		MIT1002_03438	0.83	-1.9
3,844,779	-		MIT1002_03438	0.83	-0.7
3,844,781	+		MIT1002_03438	0.83	-0.4
3,844,784	-		MIT1002_03438	0.84	+0.1
3,844,807	+		MIT1002_03438	0.85	+0.6
3,844,826	+		MIT1002_03438	0.85	-0.3
3,844,830	+		MIT1002_03438	0.86	+0.4
3,844,866	-		MIT1002_03438	0.87	+0.5
3,844,868	+		MIT1002_03438	0.87	-0.3
3,844,953	-				+0.1
3,844,955	+				+0.5
3,844,960	+				-0.7
3,844,968	-				+0.2
3,844,968	-				+0.2
3,844,968	-				-0.3
3,844,982	+				-0.0
3,844,990	-				+0.3
3,844,990	-				+0.6
3,844,990	-				-1.3
3,844,990	-				-1.0
3,845,102	-				+0.3
3,845,108	+				-0.8
3,845,116	-				+0.3
3,845,116	-				+0.9
3,845,125	+				-1.0
3,845,191	-				+1.5
3,845,289	-				+0.2
3,845,294	-				-0.9
3,845,300	-				+0.7
3,845,328	+				+0.1
3,845,328	+				+0.2
3,845,338	-				+0.3
3,845,338	-				+0.3
3,845,338	-				+0.4
3,845,340	+				-1.9
3,845,340	+				+1.1
3,845,340	-				+0.3
3,845,348	-				+0.7
3,845,375	+				+0.9
3,845,458	-		MIT1002_03439	0.14	+0.3
3,845,513	-		MIT1002_03439	0.16	+0.1
3,845,602	+		MIT1002_03439	0.20	-0.4
3,845,642	-		MIT1002_03439	0.22	+0.2
3,845,655	-		MIT1002_03439	0.22	+1.3
3,845,669	-		MIT1002_03439	0.23	-0.9
3,845,674	-		MIT1002_03439	0.23	+0.3
3,845,738	+		MIT1002_03439	0.26	+2.1
3,845,746	+		MIT1002_03439	0.27	+1.1
3,845,746	-		MIT1002_03439	0.27	-0.1
3,845,754	-		MIT1002_03439	0.27	-0.1
3,845,756	+		MIT1002_03439	0.27	+1.6
3,845,761	+		MIT1002_03439	0.27	-0.8
3,845,769	-		MIT1002_03439	0.28	-0.2
3,845,806	+		MIT1002_03439	0.29	-0.7
3,845,814	-		MIT1002_03439	0.30	-0.5
3,845,839	+		MIT1002_03439	0.31	-1.1
3,845,844	-		MIT1002_03439	0.31	-0.5
3,845,888	+		MIT1002_03439	0.33	-0.7
3,845,928	-		MIT1002_03439	0.35	+0.9
3,845,928	-		MIT1002_03439	0.35	-0.5
3,845,928	-		MIT1002_03439	0.35	+2.1
3,845,928	-		MIT1002_03439	0.35	+4.3
3,845,944	+		MIT1002_03439	0.35	+0.3
3,845,944	+		MIT1002_03439	0.35	+1.1
3,845,946	-		MIT1002_03439	0.36	-0.1
3,845,960	-		MIT1002_03439	0.36	-6.4
3,846,107	+		MIT1002_03439	0.43	+1.7
3,846,107	+		MIT1002_03439	0.43	+0.1
3,846,117	+		MIT1002_03439	0.43	+0.0
3,846,136	+		MIT1002_03439	0.44	-0.1
3,846,136	+		MIT1002_03439	0.44	+0.1