Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02570

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
2,868,096	-		MIT1002_02569	0.54	-0.5
2,868,139	+		MIT1002_02569	0.57	+0.3
2,868,210	-		MIT1002_02569	0.61	+1.4
2,868,242	-		MIT1002_02569	0.63	+1.1
2,868,264	+		MIT1002_02569	0.64	-1.3
2,868,272	-		MIT1002_02569	0.65	+3.1
2,868,272	-		MIT1002_02569	0.65	+0.6
2,868,274	+		MIT1002_02569	0.65	-0.3
2,868,277	-		MIT1002_02569	0.65	-0.2
2,868,282	-		MIT1002_02569	0.66	+0.5
2,868,284	+		MIT1002_02569	0.66	+0.4
2,868,290	+		MIT1002_02569	0.66	-2.4
2,868,290	+		MIT1002_02569	0.66	-0.1
2,868,290	+		MIT1002_02569	0.66	+0.2
2,868,298	-		MIT1002_02569	0.67	-1.6
2,868,298	-		MIT1002_02569	0.67	-0.7
2,868,298	-		MIT1002_02569	0.67	+0.2
2,868,298	-		MIT1002_02569	0.67	+1.0
2,868,298	-		MIT1002_02569	0.67	+0.7
2,868,328	+		MIT1002_02569	0.68	-1.2
2,868,428	+		MIT1002_02569	0.74	+0.5
2,868,468	+		MIT1002_02569	0.77	+0.7
2,868,476	-		MIT1002_02569	0.77	-0.1
2,868,498	+		MIT1002_02569	0.79	-0.9
2,868,506	-		MIT1002_02569	0.79	-0.7
2,868,507	-		MIT1002_02569	0.79	-0.1
2,868,570	+		MIT1002_02569	0.83	+0.3
2,868,583	+		MIT1002_02569	0.84	-0.5
2,868,591	-		MIT1002_02569	0.84	+0.2
2,868,591	-		MIT1002_02569	0.84	-0.3
2,868,603	+		MIT1002_02569	0.85	-0.0
2,868,603	+		MIT1002_02569	0.85	-1.6
2,868,603	+		MIT1002_02569	0.85	-0.2
2,868,611	-		MIT1002_02569	0.85	-0.8
2,868,642	+		MIT1002_02569	0.87	+0.6
2,868,647	+		MIT1002_02569	0.88	+0.3
2,868,658	+		MIT1002_02569	0.88	+0.3
2,868,666	-		MIT1002_02569	0.89	-0.4
2,868,675	-		MIT1002_02569	0.89	+0.0
2,868,833	+				+0.3
2,868,838	+				-0.5
2,869,000	+				+0.1
2,869,010	-				+0.4
2,869,117	-				-0.5
2,869,174	-		MIT1002_02570	0.15	-1.2
2,869,222	-		MIT1002_02570	0.22	-0.3
2,869,233	+		MIT1002_02570	0.23	+0.2
2,869,279	+		MIT1002_02570	0.30	-0.7
2,869,286	+		MIT1002_02570	0.31	-2.6
2,869,299	-		MIT1002_02570	0.32	+0.6
2,869,459	+		MIT1002_02570	0.54	-0.8
2,869,557	-		MIT1002_02570	0.68	+0.2
2,869,574	+		MIT1002_02570	0.70	+0.1
2,869,584	+		MIT1002_02570	0.72	-1.4
2,869,584	+		MIT1002_02570	0.72	-0.3
2,869,584	+		MIT1002_02570	0.72	-3.7
2,869,584	+		MIT1002_02570	0.72	+0.1
2,869,584	+		MIT1002_02570	0.72	-0.0
2,869,592	-		MIT1002_02570	0.73	-0.8
2,869,592	-		MIT1002_02570	0.73	-0.0
2,869,592	-		MIT1002_02570	0.73	-1.2
2,869,619	+		MIT1002_02570	0.76	-1.4
2,869,619	+		MIT1002_02570	0.76	-0.5
2,869,619	+		MIT1002_02570	0.76	-0.1
2,869,627	-		MIT1002_02570	0.78	+0.3
2,869,627	-		MIT1002_02570	0.78	-1.4
2,869,627	-		MIT1002_02570	0.78	+0.2
2,869,627	-		MIT1002_02570	0.78	-2.1
2,869,679	+		MIT1002_02570	0.85	+1.6
2,869,679	+		MIT1002_02570	0.85	-0.9
2,869,679	+		MIT1002_02570	0.85	-1.5
2,869,679	+		MIT1002_02570	0.85	-1.2
2,869,685	+		MIT1002_02570	0.86	+0.5
2,869,801	+				-1.7
2,869,809	-				+0.4
2,869,809	-				+0.4
2,869,841	+				+0.9
2,869,849	+				+0.8
2,869,849	+				-0.1
2,869,892	+				-0.1
2,869,893	+				-0.6
2,869,901	-				-1.0
2,869,925	+				-1.8
2,870,073	-		MIT1002_02571	0.18	-0.1
2,870,107	-		MIT1002_02571	0.20	-2.4
2,870,114	+		MIT1002_02571	0.21	+0.1
2,870,139	+		MIT1002_02571	0.22	-2.1
2,870,159	+		MIT1002_02571	0.24	-1.7
2,870,159	+		MIT1002_02571	0.24	-1.4
2,870,159	+		MIT1002_02571	0.24	-1.7
2,870,175	+		MIT1002_02571	0.25	-0.2
2,870,399	-		MIT1002_02571	0.40	-1.7
2,870,448	+		MIT1002_02571	0.44	-0.7
2,870,454	+		MIT1002_02571	0.44	+0.2
2,870,456	-		MIT1002_02571	0.44	-1.0
2,870,460	+		MIT1002_02571	0.45	-0.5
2,870,476	+		MIT1002_02571	0.46	-2.9
2,870,537	+		MIT1002_02571	0.50	-0.3
2,870,609	-		MIT1002_02571	0.55	-2.3
2,870,678	-		MIT1002_02571	0.60	-2.8
2,870,686	-		MIT1002_02571	0.60	-1.1
2,870,688	-		MIT1002_02571	0.60	-2.4
2,870,760	-		MIT1002_02571	0.65	+0.7
2,870,760	-		MIT1002_02571	0.65	-0.8
2,870,764	-		MIT1002_02571	0.66	-0.1
2,870,769	-		MIT1002_02571	0.66	-1.9
2,870,769	-		MIT1002_02571	0.66	-2.2