Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01753

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01752 and MIT1002_01753 are separated by 380 nucleotidesMIT1002_01753 and MIT1002_01754 are separated by 298 nucleotides MIT1002_01752: MIT1002_01752 - Acyl-CoA dehydrogenase, at 1,946,890 to 1,948,689 _01752 MIT1002_01753: MIT1002_01753 - hypothetical protein, at 1,949,070 to 1,949,468 _01753 MIT1002_01754: MIT1002_01754 - hypothetical protein, at 1,949,767 to 1,950,165 _01754 Position (kb) 1949 1950Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1948.128 kb on + strand, within MIT1002_01752at 1948.136 kb on - strand, within MIT1002_01752at 1948.136 kb on - strand, within MIT1002_01752at 1948.136 kb on - strand, within MIT1002_01752at 1948.163 kb on + strand, within MIT1002_01752at 1948.171 kb on - strand, within MIT1002_01752at 1948.199 kb on - strand, within MIT1002_01752at 1948.203 kb on + strand, within MIT1002_01752at 1948.203 kb on + strand, within MIT1002_01752at 1948.211 kb on - strand, within MIT1002_01752at 1948.219 kb on - strand, within MIT1002_01752at 1948.335 kb on + strand, within MIT1002_01752at 1948.335 kb on + strand, within MIT1002_01752at 1948.335 kb on + strand, within MIT1002_01752at 1948.342 kb on + strand, within MIT1002_01752at 1948.343 kb on - strand, within MIT1002_01752at 1948.343 kb on - strand, within MIT1002_01752at 1948.361 kb on + strand, within MIT1002_01752at 1948.369 kb on - strand, within MIT1002_01752at 1948.369 kb on - strand, within MIT1002_01752at 1948.375 kb on - strand, within MIT1002_01752at 1948.422 kb on - strand, within MIT1002_01752at 1948.453 kb on + strand, within MIT1002_01752at 1948.483 kb on + strand, within MIT1002_01752at 1948.483 kb on + strand, within MIT1002_01752at 1948.491 kb on - strand, within MIT1002_01752at 1948.514 kb on + strandat 1948.522 kb on - strandat 1948.597 kb on + strandat 1948.628 kb on - strandat 1948.664 kb on - strandat 1948.724 kb on - strandat 1948.859 kb on - strandat 1948.867 kb on + strandat 1948.905 kb on + strandat 1948.977 kb on - strandat 1948.979 kb on + strandat 1948.979 kb on + strandat 1948.990 kb on + strandat 1949.012 kb on + strandat 1949.042 kb on + strandat 1949.133 kb on + strand, within MIT1002_01753at 1949.141 kb on + strand, within MIT1002_01753at 1949.143 kb on + strand, within MIT1002_01753at 1949.143 kb on + strand, within MIT1002_01753at 1949.151 kb on - strand, within MIT1002_01753at 1949.195 kb on + strand, within MIT1002_01753at 1949.206 kb on - strand, within MIT1002_01753at 1949.211 kb on - strand, within MIT1002_01753at 1949.226 kb on + strand, within MIT1002_01753at 1949.231 kb on - strand, within MIT1002_01753at 1949.234 kb on - strand, within MIT1002_01753at 1949.234 kb on - strand, within MIT1002_01753at 1949.296 kb on - strand, within MIT1002_01753at 1949.340 kb on + strand, within MIT1002_01753at 1949.350 kb on + strand, within MIT1002_01753at 1949.397 kb on + strand, within MIT1002_01753at 1949.397 kb on + strand, within MIT1002_01753at 1949.405 kb on - strand, within MIT1002_01753at 1949.405 kb on - strand, within MIT1002_01753at 1949.405 kb on - strand, within MIT1002_01753at 1949.405 kb on - strand, within MIT1002_01753at 1949.469 kb on + strandat 1949.806 kb on + strandat 1949.806 kb on + strandat 1949.812 kb on + strand, within MIT1002_01754at 1949.814 kb on - strand, within MIT1002_01754at 1949.814 kb on - strand, within MIT1002_01754at 1949.814 kb on - strand, within MIT1002_01754at 1949.814 kb on - strand, within MIT1002_01754at 1949.822 kb on + strand, within MIT1002_01754at 1949.895 kb on + strand, within MIT1002_01754at 1949.910 kb on + strand, within MIT1002_01754at 1949.931 kb on - strand, within MIT1002_01754at 1949.952 kb on - strand, within MIT1002_01754at 1949.952 kb on - strand, within MIT1002_01754at 1950.051 kb on + strand, within MIT1002_01754at 1950.054 kb on - strand, within MIT1002_01754at 1950.144 kb on - strandat 1950.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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1,948,128 + MIT1002_01752 0.69 +3.0
1,948,136 - MIT1002_01752 0.69 +0.6
1,948,136 - MIT1002_01752 0.69 +1.6
1,948,136 - MIT1002_01752 0.69 -0.7
1,948,163 + MIT1002_01752 0.71 -0.3
1,948,171 - MIT1002_01752 0.71 -1.8
1,948,199 - MIT1002_01752 0.73 -0.9
1,948,203 + MIT1002_01752 0.73 +1.4
1,948,203 + MIT1002_01752 0.73 +1.3
1,948,211 - MIT1002_01752 0.73 +1.7
1,948,219 - MIT1002_01752 0.74 +0.9
1,948,335 + MIT1002_01752 0.80 -1.4
1,948,335 + MIT1002_01752 0.80 -0.6
1,948,335 + MIT1002_01752 0.80 -1.0
1,948,342 + MIT1002_01752 0.81 -4.0
1,948,343 - MIT1002_01752 0.81 -1.9
1,948,343 - MIT1002_01752 0.81 -1.2
1,948,361 + MIT1002_01752 0.82 +1.1
1,948,369 - MIT1002_01752 0.82 -0.5
1,948,369 - MIT1002_01752 0.82 -0.3
1,948,375 - MIT1002_01752 0.82 +0.2
1,948,422 - MIT1002_01752 0.85 -0.9
1,948,453 + MIT1002_01752 0.87 +0.8
1,948,483 + MIT1002_01752 0.89 -1.9
1,948,483 + MIT1002_01752 0.89 -1.0
1,948,491 - MIT1002_01752 0.89 -1.0
1,948,514 + -0.0
1,948,522 - -0.4
1,948,597 + +0.7
1,948,628 - -2.0
1,948,664 - -0.0
1,948,724 - -0.0
1,948,859 - +0.2
1,948,867 + +1.3
1,948,905 + +2.2
1,948,977 - +0.3
1,948,979 + +1.7
1,948,979 + +0.7
1,948,990 + -0.5
1,949,012 + +0.6
1,949,042 + +1.4
1,949,133 + MIT1002_01753 0.16 +1.1
1,949,141 + MIT1002_01753 0.18 +0.6
1,949,143 + MIT1002_01753 0.18 -0.6
1,949,143 + MIT1002_01753 0.18 -3.4
1,949,151 - MIT1002_01753 0.20 +0.9
1,949,195 + MIT1002_01753 0.31 +1.1
1,949,206 - MIT1002_01753 0.34 +0.5
1,949,211 - MIT1002_01753 0.35 -0.8
1,949,226 + MIT1002_01753 0.39 -0.4
1,949,231 - MIT1002_01753 0.40 -2.2
1,949,234 - MIT1002_01753 0.41 +0.5
1,949,234 - MIT1002_01753 0.41 -0.5
1,949,296 - MIT1002_01753 0.57 +1.8
1,949,340 + MIT1002_01753 0.68 -1.2
1,949,350 + MIT1002_01753 0.70 -1.6
1,949,397 + MIT1002_01753 0.82 +0.8
1,949,397 + MIT1002_01753 0.82 -1.1
1,949,405 - MIT1002_01753 0.84 -0.4
1,949,405 - MIT1002_01753 0.84 -1.4
1,949,405 - MIT1002_01753 0.84 -1.2
1,949,405 - MIT1002_01753 0.84 -1.6
1,949,469 + -0.2
1,949,806 + -0.3
1,949,806 + -0.1
1,949,812 + MIT1002_01754 0.11 -1.0
1,949,814 - MIT1002_01754 0.12 +1.3
1,949,814 - MIT1002_01754 0.12 +0.8
1,949,814 - MIT1002_01754 0.12 -0.7
1,949,814 - MIT1002_01754 0.12 -1.7
1,949,822 + MIT1002_01754 0.14 -0.9
1,949,895 + MIT1002_01754 0.32 +0.3
1,949,910 + MIT1002_01754 0.36 -1.0
1,949,931 - MIT1002_01754 0.41 +0.8
1,949,952 - MIT1002_01754 0.46 +0.6
1,949,952 - MIT1002_01754 0.46 -0.4
1,950,051 + MIT1002_01754 0.71 +0.2
1,950,054 - MIT1002_01754 0.72 -1.9
1,950,144 - -0.1
1,950,166 + +0.8

Or see this region's nucleotide sequence