Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01391

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
1,540,975	+		MIT1002_01389	0.51	+1.1
1,540,983	-		MIT1002_01389	0.52	+0.4
1,540,983	-		MIT1002_01389	0.52	-0.7
1,541,040	-		MIT1002_01389	0.60	-0.3
1,541,169	+		MIT1002_01389	0.79	+0.1
1,541,169	+		MIT1002_01389	0.79	+1.1
1,541,171	+		MIT1002_01389	0.79	+1.5
1,541,177	-		MIT1002_01389	0.80	-1.4
1,541,250	+				+1.2
1,541,279	-				+0.4
1,541,288	-				-2.1
1,541,330	+				+0.0
1,541,363	+				+0.0
1,541,398	-		MIT1002_01390	0.13	+0.6
1,541,399	+		MIT1002_01390	0.13	-0.4
1,541,430	+		MIT1002_01390	0.18	+1.1
1,541,441	+		MIT1002_01390	0.19	+0.6
1,541,441	+		MIT1002_01390	0.19	-1.0
1,541,441	+		MIT1002_01390	0.19	+0.3
1,541,441	+		MIT1002_01390	0.19	+0.4
1,541,449	-		MIT1002_01390	0.21	-0.0
1,541,467	+		MIT1002_01390	0.23	-0.3
1,541,516	-		MIT1002_01390	0.31	+0.4
1,541,516	-		MIT1002_01390	0.31	+0.1
1,541,551	+		MIT1002_01390	0.36	-0.6
1,541,551	+		MIT1002_01390	0.36	-0.3
1,541,551	+		MIT1002_01390	0.36	-0.6
1,541,551	+		MIT1002_01390	0.36	+1.1
1,541,557	+		MIT1002_01390	0.37	+0.2
1,541,596	+		MIT1002_01390	0.43	+1.0
1,541,632	+		MIT1002_01390	0.48	+1.6
1,541,640	-		MIT1002_01390	0.50	-0.0
1,541,684	+		MIT1002_01390	0.56	+0.9
1,541,684	+		MIT1002_01390	0.56	+1.8
1,541,709	-		MIT1002_01390	0.60	-1.3
1,541,711	+		MIT1002_01390	0.60	-0.0
1,541,711	+		MIT1002_01390	0.60	-0.7
1,541,735	+		MIT1002_01390	0.64	-0.1
1,541,832	-		MIT1002_01390	0.79	-0.3
1,541,885	+		MIT1002_01390	0.87	+0.2
1,541,932	-				+0.8
1,541,948	-				-1.0
1,541,992	+				+0.1
1,541,992	+				-1.9
1,542,002	+				+0.2
1,542,002	-				-0.0
1,542,015	-				-1.0
1,542,051	-				+0.0
1,542,115	-		MIT1002_01391	0.11	+0.6
1,542,178	+		MIT1002_01391	0.15	+0.9
1,542,214	+		MIT1002_01391	0.18	-1.0
1,542,256	+		MIT1002_01391	0.21	+1.5
1,542,256	+		MIT1002_01391	0.21	-3.6
1,542,256	+		MIT1002_01391	0.21	+0.9
1,542,256	-		MIT1002_01391	0.21	-0.4
1,542,357	+		MIT1002_01391	0.29	+2.3
1,542,365	-		MIT1002_01391	0.29	+0.0
1,542,448	-		MIT1002_01391	0.35	-0.6
1,542,507	+		MIT1002_01391	0.40	+1.0
1,542,628	+		MIT1002_01391	0.48	-0.3
1,542,687	+		MIT1002_01391	0.53	+0.1
1,542,819	-		MIT1002_01391	0.62	-0.3
1,542,866	+		MIT1002_01391	0.66	+1.2
1,542,876	+		MIT1002_01391	0.67	+0.4
1,542,876	+		MIT1002_01391	0.67	-3.0
1,542,917	-		MIT1002_01391	0.70	+1.3
1,542,917	-		MIT1002_01391	0.70	+0.3
1,542,939	-		MIT1002_01391	0.71	+0.5
1,542,974	+		MIT1002_01391	0.74	+0.6
1,542,976	+		MIT1002_01391	0.74	-0.7
1,542,976	+		MIT1002_01391	0.74	+0.9
1,542,991	+		MIT1002_01391	0.75	-1.0
1,542,991	+		MIT1002_01391	0.75	+2.1
1,543,007	-		MIT1002_01391	0.76	+0.2
1,543,163	-		MIT1002_01391	0.88	-0.0
1,543,186	+		MIT1002_01391	0.89	-0.3
1,543,187	-		MIT1002_01391	0.89	-0.2
1,543,237	-				-0.2
1,543,333	-				+0.3
1,543,834	+		MIT1002_01393	0.54	+0.1
1,543,843	+		MIT1002_01393	0.58	-1.5
1,543,866	-		MIT1002_01393	0.69	-0.7
1,543,884	-		MIT1002_01393	0.77	+0.5
1,543,977	-				-1.4
1,543,992	-				+2.8
1,544,004	-				-0.9
1,544,004	-				+0.7
1,544,050	-				-0.6
1,544,080	+				+1.6
1,544,109	+				+1.2
1,544,109	+				-3.5
1,544,109	+				+1.0
1,544,109	+				+0.7
1,544,109	+				-0.4
1,544,109	+				+0.9
1,544,117	-		MIT1002_01394	0.10	-0.7
1,544,117	-		MIT1002_01394	0.10	+1.1
1,544,117	-		MIT1002_01394	0.10	-0.9
1,544,132	+		MIT1002_01394	0.11	+0.1
1,544,175	+		MIT1002_01394	0.13	+1.3
1,544,183	-		MIT1002_01394	0.14	+0.4
1,544,188	+		MIT1002_01394	0.14	+0.3
1,544,231	+		MIT1002_01394	0.16	+0.6
1,544,231	+		MIT1002_01394	0.16	+0.4
1,544,231	+		MIT1002_01394	0.16	+0.3
1,544,283	+		MIT1002_01394	0.19	+0.2
1,544,291	-		MIT1002_01394	0.20	-1.5
1,544,304	+		MIT1002_01394	0.20	+0.4