Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01147

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
1,257,762	+		MIT1002_01146	0.10	-0.7
1,257,828	+		MIT1002_01146	0.18	-0.1
1,257,828	+		MIT1002_01146	0.18	+0.5
1,257,828	+		MIT1002_01146	0.18	+1.4
1,257,917	+		MIT1002_01146	0.30	-1.0
1,257,923	-		MIT1002_01146	0.30	-1.1
1,257,923	-		MIT1002_01146	0.30	-0.2
1,258,197	-		MIT1002_01146	0.65	-1.2
1,258,228	+		MIT1002_01146	0.68	+0.3
1,258,228	+		MIT1002_01146	0.68	-0.4
1,258,228	+		MIT1002_01146	0.68	-0.3
1,258,277	+		MIT1002_01146	0.75	-0.6
1,258,277	+		MIT1002_01146	0.75	-1.0
1,258,277	+		MIT1002_01146	0.75	+0.3
1,258,285	-		MIT1002_01146	0.76	+0.5
1,258,340	-		MIT1002_01146	0.82	-0.4
1,258,509	-				+0.4
1,258,583	+				-0.3
1,259,086	+		MIT1002_01147	0.25	+0.6
1,259,095	-		MIT1002_01147	0.26	+0.1
1,259,158	-		MIT1002_01147	0.30	+0.7
1,259,160	+		MIT1002_01147	0.30	+1.0
1,259,181	+		MIT1002_01147	0.31	-0.1
1,259,189	-		MIT1002_01147	0.32	-0.2
1,259,189	-		MIT1002_01147	0.32	-0.0
1,259,191	-		MIT1002_01147	0.32	-0.5
1,259,201	-		MIT1002_01147	0.32	+0.8
1,259,220	+		MIT1002_01147	0.34	-0.7
1,259,233	-		MIT1002_01147	0.34	-0.3
1,259,250	+		MIT1002_01147	0.36	-0.7
1,259,260	+		MIT1002_01147	0.36	-2.1
1,259,284	-		MIT1002_01147	0.38	+0.3
1,259,353	-		MIT1002_01147	0.42	-1.0
1,259,363	-		MIT1002_01147	0.43	+0.2
1,259,481	-		MIT1002_01147	0.50	-1.1
1,259,509	-		MIT1002_01147	0.52	-0.4
1,259,539	-		MIT1002_01147	0.54	-0.6
1,259,550	+		MIT1002_01147	0.55	-1.4
1,259,617	+		MIT1002_01147	0.59	+0.6
1,259,776	+		MIT1002_01147	0.69	-1.2
1,259,812	-		MIT1002_01147	0.72	+1.4
1,259,869	+		MIT1002_01147	0.75	-0.3
1,259,869	+		MIT1002_01147	0.75	+0.1
1,259,874	+		MIT1002_01147	0.76	-0.9
1,259,877	-		MIT1002_01147	0.76	-1.7
1,259,887	-		MIT1002_01147	0.76	-1.1
1,259,940	+		MIT1002_01147	0.80	+0.2
1,259,943	+		MIT1002_01147	0.80	-1.7
1,259,946	-		MIT1002_01147	0.80	-1.1
1,259,965	-		MIT1002_01147	0.82	+0.2
1,259,998	-		MIT1002_01147	0.84	-0.3
1,260,088	+		MIT1002_01147	0.89	+0.4
1,260,135	+				-3.0
1,260,143	-				+0.9
1,260,143	-				+1.2
1,260,270	+				-1.5
1,260,271	-				+0.1
1,260,282	+				-1.0
1,260,287	+				-0.3
1,260,431	+				+0.4
1,260,444	+				+0.5
1,260,444	+				-0.1
1,260,444	+				+0.5
1,260,444	+				-0.3
1,260,452	-				-1.3
1,260,463	-				+1.3
1,260,463	-				+1.6
1,260,475	+				+0.4
1,260,475	+				-0.4
1,260,522	+				-1.0
1,260,527	+				-0.8
1,260,717	-				-0.5
1,260,748	+				-0.7
1,260,750	+				-2.6
1,260,750	+				+0.8
1,260,750	+				-0.2
1,260,750	+				+0.1
1,260,756	-				+0.2
1,260,758	-				-0.5
1,260,758	-				+0.0
1,260,758	-				-2.8
1,260,758	-				-0.2
1,260,758	-				+0.8
1,260,758	-				+0.9
1,260,758	-				-0.7
1,260,758	-				-0.3
1,260,758	-				+0.5
1,260,846	+		MIT1002_01148	0.18	-1.5
1,260,893	+		MIT1002_01148	0.22	-1.4
1,260,893	+		MIT1002_01148	0.22	-0.2
1,260,893	+		MIT1002_01148	0.22	-1.4
1,260,893	+		MIT1002_01148	0.22	-1.0
1,260,893	+		MIT1002_01148	0.22	-1.5
1,260,893	+		MIT1002_01148	0.22	-1.5
1,260,893	+		MIT1002_01148	0.22	-1.8
1,260,893	+		MIT1002_01148	0.22	-1.2
1,260,893	+		MIT1002_01148	0.22	-1.5
1,260,901	-		MIT1002_01148	0.23	-1.1
1,260,901	-		MIT1002_01148	0.23	-1.5
1,260,901	-		MIT1002_01148	0.23	-0.8
1,260,901	-		MIT1002_01148	0.23	-0.0
1,260,901	-		MIT1002_01148	0.23	-1.5
1,260,901	-		MIT1002_01148	0.23	+0.2
1,260,901	-		MIT1002_01148	0.23	-1.1
1,260,901	-		MIT1002_01148	0.23	-2.0
1,260,901	-		MIT1002_01148	0.23	-1.1
1,260,901	-		MIT1002_01148	0.23	-1.3
1,260,927	+		MIT1002_01148	0.26	-0.3
1,260,983	+		MIT1002_01148	0.31	-0.6
1,260,983	+		MIT1002_01148	0.31	-0.5
1,260,983	+		MIT1002_01148	0.31	-1.5
1,261,010	+		MIT1002_01148	0.34	-1.9
1,261,099	-		MIT1002_01148	0.43	-0.7
1,261,129	+		MIT1002_01148	0.45	-2.4
1,261,132	-		MIT1002_01148	0.46	-0.3
1,261,132	-		MIT1002_01148	0.46	-3.2
1,261,192	+		MIT1002_01148	0.52	-1.2